ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100284364	acid phosphatase/vanadium-dependent haloperoxidase related
zma-r.6	100284364	acid phosphatase/vanadium-dependent haloperoxidase related
zma-u.5	100281758	uncharacterized LOC100281758
zma-u.5	100280563	acid phosphatase/vanadium-dependent haloperoxidase related
zma-u.5	100285275	acid phosphatase/vanadium-dependent haloperoxidase related
sbi-r.1	8056123	uncharacterized membrane protein YuiD
sbi-r.1	8073688	uncharacterized membrane protein YuiD
sbi-r.1	8074056	uncharacterized membrane protein YuiD
osa-u.5	4325009	uncharacterized LOC4325009
osa-u.5	4344570	uncharacterized membrane protein YuiD
osa-u.5	4336218	uncharacterized membrane protein YuiD
tae-r.2	123071670	uncharacterized membrane protein YuiD
tae-r.2	123159368	uncharacterized membrane protein YuiD
tae-r.2	123045820	uncharacterized membrane protein YuiD
hvu-r.1	123407577	uncharacterized membrane protein YuiD-like
hvu-r.1	123427060	uncharacterized membrane protein YuiD-like
hvu-r.1	123445030	uncharacterized membrane protein YuiD-like
bdi-r.1	100829864	uncharacterized membrane protein YuiD
bdi-r.1	100821322	uncharacterized membrane protein YuiD
bdi-r.1	100821590	uncharacterized membrane protein YuiD
ath-u.5	AT3G21610	Acid phosphatase/vanadium-dependent haloperoxidase-related protein
ath-u.5	AT1G24350	Acid phosphatase/vanadium-dependent haloperoxidase-related protein
ath-u.5	AT1G67600	Acid phosphatase/vanadium-dependent haloperoxidase-related protein
gma-u.5	100786344	uncharacterized membrane protein YuiD
gma-u.5	100804874	uncharacterized membrane protein YuiD
sly-u.5	101251275	uncharacterized LOC101251275
sly-u.5	101261814	uncharacterized LOC101261814
bra-r.6	103869160	uncharacterized membrane protein YuiD
bra-r.6	103859915	uncharacterized membrane protein YuiD
vvi-u.5	100252740	uncharacterized LOC100252740
vvi-u.5	100246493	uncharacterized LOC100246493
vvi-u.5	100243628	uncharacterized LOC100243628
ppo-u.5	7489889	uncharacterized LOC7489889
ppo-u.5	7483617	uncharacterized LOC7483617
ppo-u.5	7477040	uncharacterized LOC7477040
mtr-u.5	11437568	uncharacterized membrane protein YuiD
mtr-u.5	11408861	uncharacterized membrane protein YuiD
ghi-r.1	107886521	uncharacterized membrane protein YuiD
ghi-r.1	107909821	uncharacterized membrane protein YuiD
ghi-r.1	107919727	uncharacterized membrane protein YuiD
bna-r.1	BNAC03G75800D	uncharacterized membrane protein YuiD
bna-r.1	BNAA08G19060D	uncharacterized membrane protein YuiD
sot-r.1	102597233	uncharacterized membrane protein YuiD
sot-r.1	102588354	uncharacterized membrane protein YuiD-like
cit-r.1	102623796	hypothetical protein
cit-r.1	102619129	uncharacterized LOC102619129
nta-r.1	107763878	uncharacterized LOC107763878
nta-r.1	107807911	uncharacterized LOC107807911
cre-r.1	CHLRE_02g106350v5	uncharacterized protein

Top 50 coexpressed genes to 100284364 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100284364 (zma-u.5 coexpression data)

CoexMap"100284364"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

NP_001150731.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 2, cyto 2, nucl 1, nucl_plas 1, vacu 1, chlo_mito 1, cyto_E.R. 1

(predict for NP_001150731.1)

Subcellular
localization
TargetP

other 3

(predict for NP_001150731.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100284364	zma-r.6 for 100284364	zma-u.5 for 100281758	zma-u.5 for 100280563	zma-u.5 for 100285275	sbi-r.1 for 8056123	sbi-r.1 for 8073688	sbi-r.1 for 8074056	osa-u.5 for 4325009	osa-u.5 for 4344570	osa-u.5 for 4336218	tae-r.2 for 123071670	tae-r.2 for 123159368	tae-r.2 for 123045820	hvu-r.1 for 123407577	hvu-r.1 for 123427060	hvu-r.1 for 123445030	bdi-r.1 for 100829864	bdi-r.1 for 100821322	bdi-r.1 for 100821590	ath-u.5 for AT3G21610	ath-u.5 for AT1G24350	ath-u.5 for AT1G67600	gma-u.5 for 100786344	gma-u.5 for 100804874	sly-u.5 for 101251275	sly-u.5 for 101261814	bra-r.6 for 103869160	bra-r.6 for 103859915	vvi-u.5 for 100252740	vvi-u.5 for 100246493	vvi-u.5 for 100243628	ppo-u.5 for 7489889	ppo-u.5 for 7483617	ppo-u.5 for 7477040	mtr-u.5 for 11437568	mtr-u.5 for 11408861	ghi-r.1 for 107886521	ghi-r.1 for 107909821	ghi-r.1 for 107919727	bna-r.1 for BNAC03G75800D	bna-r.1 for BNAA08G19060D	sot-r.1 for 102597233	sot-r.1 for 102588354	cit-r.1 for 102623796	cit-r.1 for 102619129	nta-r.1 for 107763878	nta-r.1 for 107807911	cre-r.1 for CHLRE_02g106350v5

Ortholog

Ortholog ID: 1316

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC100281758

acid phosphatase/vanadium-dependent haloperoxidase related

acid phosphatase/vanadium-dependent haloperoxidase protein

uncharacterized membrane protein YuiD

uncharacterized LOC4325009

uncharacterized membrane protein YuiD

uncharacterized membrane protein YuiD-like

uncharacterized membrane protein YuiD

Acid phosphatase/vanadium-dependent haloperoxidase-related protein

uncharacterized membrane protein YuiD

uncharacterized LOC101251275

uncharacterized LOC101261814

uncharacterized membrane protein YuiD

uncharacterized LOC100252740

uncharacterized LOC100246493

uncharacterized LOC100243628

uncharacterized LOC7489889

uncharacterized LOC7477040

uncharacterized LOC7462067

uncharacterized membrane protein YuiD

uncharacterized membrane protein YuiD-like

uncharacterized membrane protein YuiD

uncharacterized membrane protein YuiD-like

hypothetical protein

uncharacterized LOC102619129

uncharacterized LOC107763878

uncharacterized LOC107826063

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00561	Glycerolipid metabolism	3
zma00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00564	Glycerophospholipid metabolism	3
sbi00740	Riboflavin metabolism	2
sbi00561	Glycerolipid metabolism	2
sbi00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	6
sbi03060	Protein export	3
sbi04145	Phagosome	3
sbi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00564	Glycerophospholipid metabolism	3
osa00561	Glycerolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa01240	Biosynthesis of cofactors	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	2
hvu01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04145	Phagosome	2
bdi04517	IgSF CAM signaling	2
bdi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00564	Glycerophospholipid metabolism	2
ath00740	Riboflavin metabolism	2
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	2
sly00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01250	Biosynthesis of nucleotide sugars	3
vvi00541	Biosynthesis of various nucleotide sugars	2
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	6
vvi03083	Polycomb repressive complex	3
vvi04141	Protein processing in endoplasmic reticulum	3
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00010	Glycolysis / Gluconeogenesis	4
ppo01200	Carbon metabolism	4
ppo01230	Biosynthesis of amino acids	4
ppo01240	Biosynthesis of cofactors	3
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	3
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr04142	Lysosome	2
mtr04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03083	Polycomb repressive complex	4
sot04120	Ubiquitin mediated proteolysis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	3
nta00566	Sulfoquinovose metabolism	3
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	4
nta00566	Sulfoquinovose metabolism	4
nta00541	Biosynthesis of various nucleotide sugars	2
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	4
cre04130	SNARE interactions in vesicular transport	2
cre03250	Viral life cycle - HIV-1	2
cre03272	Virion - Hepatitis viruses	2

Expression

Expression pattern

Entrez Gene ID^*

100281758

100285275

100273328

8056123

8073688

8074056

4325009

4344570

4336218

123159368

123062826

123189582

123407577

123427060

123445030

100829864

100821322

100821590

821715

839051

843081

100786344

100804874

101251275

101261814

103835422

103852414

100252740

100246493

100243628

7489889

7477040

7462067

11437568

11408861

107919727

107954757

121225103

106361886

106390611

106358079

102597233

102588354

102623796

102619129

107763878

107826063

5725300

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Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	3	3	3	3	3	3	2	2	2	3	3	2	3	2	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100284364 (zma-u.5 coexpression data)

Top 50 enrichment test to 100284364 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**