ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	100284801	plant-specific domain TIGR01627 family protein
zma-r.6	100284801	plant-specific domain TIGR01627 family protein
zma-m.5	100284801	plant-specific domain TIGR01627 family protein
osa-u.5	4350540	arabinogalactan O-methyltransferase 1
ath-u.5	AT1G27930	glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
gma-u.5	100789499	probable methyltransferase At1g27930
gma-u.5	100786348	probable methyltransferase At1g27930
vvi-u.5	100265182	arabinogalactan O-methyltransferase 1
vvi-u.5	100253955	arabinogalactan O-methyltransferase 1
ppo-u.5	7460546	probable methyltransferase At1g27930
ppo-u.5	7496574	probable methyltransferase At1g27930
mtr-u.5	11441060	probable methyltransferase At1g27930
mtr-u.5	25501752	probable methyltransferase At1g27930

Annotation

functional annotation

KEGG

GO BP

GO:0045492 [list] [network] xylan biosynthetic process

(50 genes)

IEA

GO CC

GO MF

Protein

NP_001151168.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, mito 3, vacu 1, cyto_mito 1, mito_plas 1

(predict for NP_001151168.1)

Subcellular
localization
TargetP

mito 2

(predict for NP_001151168.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100284801	zma-r.6 for 100284801	zma-m.5 for 100284801	osa-u.5 for 4350540	ath-u.5 for AT1G27930	gma-u.5 for 100789499	gma-u.5 for 100786348	vvi-u.5 for 100265182	vvi-u.5 for 100253955	ppo-u.5 for 7460546	ppo-u.5 for 7496574	mtr-u.5 for 11441060	mtr-u.5 for 25501752

Ortholog

Ortholog ID: 2681

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

plant-specific domain TIGR01627 family protein

probable methyltransferase At1g27930

arabinogalactan O-methyltransferase 1

probable methyltransferase At1g27930

glucuronoxylan 4-O-methyltransferase-like protein (DUF579)

probable methyltransferase At1g27930

arabinogalactan O-methyltransferase 1

probable methyltransferase At1g27930

arabinogalactan O-methyltransferase 1-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	5
sbi04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04145	Phagosome	3
tae04517	IgSF CAM signaling	3
tae04814	Motor proteins	3
tae00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04145	Phagosome	6
tae04517	IgSF CAM signaling	6
tae04814	Motor proteins	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	4
bra00510	N-Glycan biosynthesis	2
bra00513	Various types of N-glycan biosynthesis	2
bra03060	Protein export	2
bra04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00670	One carbon pool by folate	3
vvi01200	Carbon metabolism	3
vvi00999	Biosynthesis of various plant secondary metabolites	3
vvi00260	Glycine, serine and threonine metabolism	2
vvi00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2
ppo04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00561	Glycerolipid metabolism	2
mtr00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00670	One carbon pool by folate	6
mtr01230	Biosynthesis of amino acids	6
mtr01240	Biosynthesis of cofactors	6
mtr00270	Cysteine and methionine metabolism	6
mtr00541	Biosynthesis of various nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03440	Homologous recombination	2
sot03450	Non-homologous end-joining	2
sot00240	Pyrimidine metabolism	2
sot01232	Nucleotide metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	8
nta04075	Plant hormone signal transduction	3

Expression

Expression pattern

Entrez Gene ID^*

100284801

8075801

4350540

123072513

123080733

123440952

123430539

100846436

839686

100820087

103839009

103829041

100253955

100265182

7496574

7460546

25501752

11441060

107946266

107917601

106411270

106358042

102593691

102609885

107807561

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100284801 (zma-u.5 coexpression data)

Top 50 enrichment test to 100284801 (zma-u.5 coexpression data)


Species	zma	osa	ath	gma	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	sly	ghi	sot	nta	cre	tae
Paralog	3	1	1	2	2	2	2	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100284801 (zma-u.5 coexpression data)

Top 50 enrichment test to 100284801 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**