ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100285521	snRK1-interacting protein 1
zma-r.6	100285521	snRK1-interacting protein 1
zma-u.5	100281219	uncharacterized LOC100281219
sbi-r.1	8058991	DNA repair RAD52-like protein 2, chloroplastic
sbi-r.1	8061404	DNA repair RAD52-like protein 2, chloroplastic
osa-u.5	4334803	DNA repair RAD52-like protein 2, chloroplastic
osa-u.5	4347552	DNA repair RAD52-like protein 2, chloroplastic
tae-r.2	123101460	DNA repair RAD52-like protein 2, chloroplastic
tae-r.2	123112653	DNA repair RAD52-like protein 2, chloroplastic
tae-r.2	123114362	DNA repair RAD52-like protein 2, chloroplastic
hvu-r.1	123395151	DNA repair RAD52-like protein 2, chloroplastic
bdi-r.1	100828030	DNA repair RAD52-like protein 2, chloroplastic
bdi-r.1	100825351	DNA repair RAD52-like protein 2, chloroplastic
ath-u.5	RAD52-2	cobalt ion-binding protein
gma-u.5	100306634	uncharacterized LOC100306634
sly-u.5	101259907	DNA repair RAD52-like protein 2, chloroplastic
bra-r.6	103874910	DNA repair RAD52-like protein 2, chloroplastic
bra-r.6	103837233	DNA repair RAD52-like protein 2, chloroplastic
vvi-u.5	100260946	DNA repair RAD52-like protein 2, chloroplastic
ppo-u.5	7497566	DNA repair RAD52-like protein 2, chloroplastic
ppo-u.5	7477769	DNA repair RAD52-like protein 2, chloroplastic
mtr-u.5	25495088	DNA repair RAD52-like protein 2, chloroplastic
ghi-r.1	107888517	DNA repair RAD52-like protein 2, chloroplastic
ghi-r.1	107901978	DNA repair RAD52-like protein 2, chloroplastic
ghi-r.1	121203075	DNA repair RAD52-like protein 2, chloroplastic
bna-r.1	125596275	DNA repair RAD52-like protein 2, chloroplastic
bna-r.1	125590015	DNA repair RAD52-like protein 2, chloroplastic
bna-r.1	125590014	DNA repair RAD52-like protein 2, chloroplastic
sot-r.1	102587460	uncharacterized LOC102587460
cit-r.1	102625430	hypothetical protein
nta-r.1	107832824	DNA repair RAD52-like protein 2, chloroplastic
nta-r.1	107808210	DNA repair RAD52-like protein 2, chloroplastic

Top 50 coexpressed genes to 100285521 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100285521 (zma-u.5 coexpression data)

CoexMap"100285521"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000724 [list] [network] double-strand break repair via homologous recombination

(84 genes)

IEA

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(2288 genes)

IEA

Protein

NP_001278574.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, mito 1

(predict for NP_001278574.1)

Subcellular
localization
TargetP

chlo 9

(predict for NP_001278574.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100285521	zma-r.6 for 100285521	zma-u.5 for 100281219	sbi-r.1 for 8058991	sbi-r.1 for 8061404	osa-u.5 for 4334803	osa-u.5 for 4347552	tae-r.2 for 123101460	tae-r.2 for 123112653	tae-r.2 for 123114362	hvu-r.1 for 123395151	bdi-r.1 for 100828030	bdi-r.1 for 100825351	ath-u.5 for RAD52-2	gma-u.5 for 100306634	sly-u.5 for 101259907	bra-r.6 for 103874910	bra-r.6 for 103837233	vvi-u.5 for 100260946	ppo-u.5 for 7497566	ppo-u.5 for 7477769	mtr-u.5 for 25495088	ghi-r.1 for 107888517	ghi-r.1 for 107901978	ghi-r.1 for 121203075	bna-r.1 for 125596275	bna-r.1 for 125590015	bna-r.1 for 125590014	sot-r.1 for 102587460	cit-r.1 for 102625430	nta-r.1 for 107832824	nta-r.1 for 107808210

Ortholog

Ortholog ID: 4136

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

RAD52-2

Function^*

snRK1-interacting protein 1

uncharacterized LOC100281219

DNA repair RAD52-like protein 2, chloroplastic

cobalt ion-binding protein

uncharacterized LOC100306634

DNA repair RAD52-like protein 2, chloroplastic

uncharacterized LOC102587460

hypothetical protein

DNA repair RAD52-like protein 2, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00900	Terpenoid backbone biosynthesis	6
zma00541	Biosynthesis of various nucleotide sugars	2
zma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	8
zma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	6
zma01200	Carbon metabolism	5
zma00010	Glycolysis / Gluconeogenesis	2
zma00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01230	Biosynthesis of amino acids	9
osa00400	Phenylalanine, tyrosine and tryptophan biosynthesis	8
osa01200	Carbon metabolism	2
osa00940	Phenylpropanoid biosynthesis	2
osa00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00030	Pentose phosphate pathway	4
tae01200	Carbon metabolism	4
tae01230	Biosynthesis of amino acids	4
tae00710	Carbon fixation by Calvin cycle	3
tae00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	3
hvu00260	Glycine, serine and threonine metabolism	2
hvu00280	Valine, leucine and isoleucine degradation	2
hvu00310	Lysine degradation	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	3
bdi00230	Purine metabolism	2
bdi00010	Glycolysis / Gluconeogenesis	2
bdi00620	Pyruvate metabolism	2
bdi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01230	Biosynthesis of amino acids	9
ath00400	Phenylalanine, tyrosine and tryptophan biosynthesis	6
ath01200	Carbon metabolism	3
ath00010	Glycolysis / Gluconeogenesis	2
ath00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	8
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
gma01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00510	N-Glycan biosynthesis	2
sly03060	Protein export	2
sly01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	8
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	6
bra00940	Phenylpropanoid biosynthesis	5
bra01200	Carbon metabolism	4
bra00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	13
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	11
bra00350	Tyrosine metabolism	3
bra00999	Biosynthesis of various plant secondary metabolites	3
bra00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01230	Biosynthesis of amino acids	3
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01230	Biosynthesis of amino acids	3
ppo00940	Phenylpropanoid biosynthesis	3
ppo00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ppo04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00940	Phenylpropanoid biosynthesis	6
ppo00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
ppo01230	Biosynthesis of amino acids	3
ppo00360	Phenylalanine metabolism	2
ppo00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01240	Biosynthesis of cofactors	3
mtr00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
mtr01230	Biosynthesis of amino acids	3
mtr00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
ghi01230	Biosynthesis of amino acids	7
ghi00350	Tyrosine metabolism	5
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
ghi00360	Phenylalanine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
ghi01230	Biosynthesis of amino acids	7
ghi00350	Tyrosine metabolism	4
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
ghi00360	Phenylalanine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	6
ghi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	7
bna00280	Valine, leucine and isoleucine degradation	4
bna00410	beta-Alanine metabolism	4
bna00640	Propanoate metabolism	4
bna00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
bna01230	Biosynthesis of amino acids	7
bna00010	Glycolysis / Gluconeogenesis	2
bna00071	Fatty acid degradation	2
bna00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
bna01230	Biosynthesis of amino acids	7
bna00010	Glycolysis / Gluconeogenesis	2
bna00071	Fatty acid degradation	2
bna00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00400	Phenylalanine, tyrosine and tryptophan biosynthesis	9
sot01230	Biosynthesis of amino acids	9
sot04141	Protein processing in endoplasmic reticulum	5
sot04145	Phagosome	3
sot00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	5

Expression

Expression pattern

Entrez Gene ID^*

100285521

100281219

8058991

8061404

4334803

4347552

123101460

123114362

123123862

123395151

100828030

100825351

834838

100306634

101259907

103874910

103837233

100260946

7497566

7477769

25495088

107901978

121203075

107941127

125596275

106363988

106397823

102587460

102625430

107832824

107808210

The preparation time of this page was 2.1 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	2	2	3	1	2	1	1	1	2	1	2	1	3	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100285521 (zma-u.5 coexpression data)

Top 50 enrichment test to 100285521 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**