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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100306098   uncharacterized LOC100306098 
 gma-r.7   100306098   uncharacterized LOC100306098 
 gma-u.5   100499667   uncharacterized LOC100499667 
 mtr-u.5   11426241   DNA-directed RNA polymerases II and IV subunit 5A 
 mtr-u.5   11438657   DNA-directed RNA polymerases II and IV subunit 5A 
 mtr-u.5   11407830   DNA-directed RNA polymerases II and IV subunit 5A 
 ppo-u.5   18100431   DNA-directed RNA polymerases II and IV subunit 5A 
 ath-u.5   NRPB5   Eukaryotic rpb5 RNA polymerase subunit family protein 
 vvi-u.5   100259318   DNA-directed RNA polymerases II and IV subunit 5A 
 sly-u.5   101249921   DNA-directed RNA polymerases II and IV subunit 5A 
 sly-u.5   104646151   DNA-directed RNA polymerases II and IV subunit 5A 
 osa-u.5   9270850   DNA-directed RNA polymerases II and IV subunit 5A 
 osa-u.5   4327549   DNA-directed RNA polymerases II and IV subunit 5A 
 zma-u.5   100193880   DNA-directed RNA polymerases II and IV subunit 5A 
 zma-u.5   100273250   uncharacterized LOC100273250 

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Top 50 coexpressed genes to 100306098 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100306098 (gma-u.5 coexpression data)

CoexMap"100306098"


gmaLOC100306098 | Entrez gene ID : 100306098      
Species gma mtr ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 3 1 1 1 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03020 [list] [network] RNA polymerase (81 genes)
gmx03420 [list] [network] Nucleotide excision repair (129 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (402 genes)  IEA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (27 genes)  IEA  
GO:0005665 [list] [network] RNA polymerase II, core complex  (38 genes)  IEA  
GO:0005666 [list] [network] RNA polymerase III complex  (45 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (3517 genes)  IEA  
Protein NP_001237497.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  pero 4,  cyto_pero 4  (predict for NP_001237497.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for NP_001237497.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100306098

.
gma-r.7
for
100306098

.
gma-u.5
for
100499667

.
mtr-u.5
for
11426241

.
mtr-u.5
for
11438657

.
mtr-u.5
for
11407830

.
ppo-u.5
for
18100431

.
ath-u.5
for
NRPB5

.
vvi-u.5
for
100259318

.
sly-u.5
for
101249921

.
sly-u.5
for
104646151

.
osa-u.5
for
9270850

.
osa-u.5
for
4327549

.
zma-u.5
for
100193880

.
zma-u.5
for
100273250

.


Ortholog ID: 2647
Species ath gma gma sly sly osa osa zma zma bra bra vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol NRPB5 LOC100306098 LOC100499667 LOC104646151 LOC101249921 LOC9270850 LOC4327549 LOC100193880 LOC100273250 LOC103869090 LOC103859952 LOC100259318 LOC18100431 LOC11438657 LOC11426241 LOC123079481 LOC123062344 LOC123444642 LOC123427064 LOC107932939 LOC107932797 LOC125600349 LOC106418028 CHLRE_09g403219v5 LOC110436107 LOC110433983 LOC102590791 LOC102629940 LOC100831395 LOC100844964 LOC107773718 LOC142169428
Function* Eukaryotic rpb5 RNA polymerase subunit family protein uncharacterized LOC100306098 uncharacterized LOC100499667 DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A uncharacterized LOC100273250 DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A uncharacterized protein DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03010 Ribosome 2
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03013 Nucleocytoplasmic transport 3
gma03010 Ribosome 2
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03040 Spliceosome 3
sly03020 RNA polymerase 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03015 mRNA surveillance pathway 3
zma03040 Spliceosome 3
zma03050 Proteasome 2
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
bra00073 Cutin, suberine and wax biosynthesis 2
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 6
vvi03040 Spliceosome 2
vvi03010 Ribosome 2
vvi03020 RNA polymerase 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 6
mtr03020 RNA polymerase 3
mtr03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
mtr03420 Nucleotide excision repair 3
mtr03010 Ribosome 2
mtr00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 6
tae04075 Plant hormone signal transduction 6
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 3
tae04075 Plant hormone signal transduction 3
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 6
bna03420 Nucleotide excision repair 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 4
cre03008 Ribosome biogenesis in eukaryotes 3
cre03018 RNA degradation 3
cre03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 5
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 3
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04136 Autophagy - other 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 5
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 5
nta03420 Nucleotide excision repair 5
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 5
nta03420 Nucleotide excision repair 5
nta03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821801 100306098 100499667 104646151 101249921 9270850 4327549 100193880 100273250 103869090 103859952 100259318 18100431 11438657 11426241 123079481 123062344 123444642 123427064 107932939 107932797 125600349 106418028 5723197 110436107 110433983 102590791 102629940 100831395 100844964 107773718 142169428
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