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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100306382   uncharacterized LOC100306382 
 gma-r.7   100306382   uncharacterized LOC100306382 
 mtr-u.5   25492285   DNA polymerase epsilon subunit 3 
 ppo-u.5   7474909   DNA polymerase II subunit B4 
 ath-u.5   NF-YB11   nuclear factor Y, subunit B11 
 vvi-u.5   100262207   DNA polymerase II subunit B4 
 sly-u.5   101260506   DNA polymerase II subunit B4 
 osa-u.5   4347894   DNA polymerase II subunit B4 
 zma-u.5   100282897   uncharacterized LOC100282897 

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Top 50 coexpressed genes to 100306382 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100306382 (gma-u.5 coexpression data)

CoexMap"100306382"


gmaLOC100306382 | Entrez gene ID : 100306382      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03030 [list] [network] DNA replication (69 genes)
gmx03082 [list] [network] ATP-dependent chromatin remodeling (120 genes)
gmx03410 [list] [network] Base excision repair (77 genes)
gmx03420 [list] [network] Nucleotide excision repair (129 genes)
GO BP
GO:0006272 [list] [network] leading strand elongation  (10 genes)  IEA  
GO:0031507 [list] [network] heterochromatin formation  (77 genes)  IEA  
GO:0006974 [list] [network] DNA damage response  (552 genes)  IEA  
GO CC
GO:0008623 [list] [network] CHRAC  (4 genes)  IEA  
GO:0008622 [list] [network] epsilon DNA polymerase complex  (7 genes)  IEA  
GO MF
GO:0031490 [list] [network] chromatin DNA binding  (64 genes)  IEA  
GO:0046982 [list] [network] protein heterodimerization activity  (167 genes)  IEA  
Protein NP_001237961.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001237961.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001237961.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100306382

.
gma-r.7
for
100306382

.
mtr-u.5
for
25492285

.
ppo-u.5
for
7474909

.
ath-u.5
for
NF-YB11

.
vvi-u.5
for
100262207

.
sly-u.5
for
101260506

.
osa-u.5
for
4347894

.
zma-u.5
for
100282897

.


Ortholog ID: 9402
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol NF-YB11 LOC100306382 LOC101260506 LOC4347894 LOC100282897 LOC103829668 LOC100262207 LOC7474909 LOC25492285 LOC123095584 LOC123087399 LOC123446844 LOC107959354 LOC107906690 LOC106392073 LOC106399331 CHLRE_07g341800v5 LOC8062546 LOC102603585 LOC102618948 LOC104584736 LOC107808429 LOC107808204
Function* nuclear factor Y, subunit B11 uncharacterized LOC100306382 DNA polymerase II subunit B4 DNA polymerase II subunit B4 uncharacterized LOC100282897 DNA polymerase epsilon subunit 3 DNA polymerase II subunit B4 DNA polymerase II subunit B4 DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3-like DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3 uncharacterized protein DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3 DNA polymerase II subunit B4 DNA polymerase epsilon subunit 3 uncharacterized LOC107808429 DNA polymerase II subunit B4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly03040 Spliceosome 3
sly03082 ATP-dependent chromatin remodeling 3
sly03420 Nucleotide excision repair 2
sly03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 12
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma00190 Oxidative phosphorylation 3
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03018 RNA degradation 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 15
tae03410 Base excision repair 5
tae03420 Nucleotide excision repair 5
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03410 Base excision repair 7
tae03420 Nucleotide excision repair 5
tae03430 Mismatch repair 2
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03420 Nucleotide excision repair 9
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 6
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03420 Nucleotide excision repair 9
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 6
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03082 ATP-dependent chromatin remodeling 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03082 ATP-dependent chromatin remodeling 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 4
sot03410 Base excision repair 3
sot03420 Nucleotide excision repair 3
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 3
cit03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 7
nta03420 Nucleotide excision repair 7
nta03410 Base excision repair 5
nta03430 Mismatch repair 5
nta03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 7
nta03420 Nucleotide excision repair 7
nta03410 Base excision repair 5
nta03430 Mismatch repair 5
nta03440 Homologous recombination 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817292 100306382 101260506 4347894 100282897 103829668 100262207 7474909 25492285 123095584 123087399 123446844 107959354 107906690 106392073 106399331 5717994 8062546 102603585 102618948 104584736 107808429 107808204
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