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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100306558   high-mobility group box protein 
 gma-r.7   100306558   high-mobility group box protein 
 gma-m.5   100306558   high-mobility group box protein 
 gma-u.5   100807979   ATP-dependent DNA helicase Q-like 1 
 gma-u.5   100820624   high mobility group B protein 14 
 gma-u.5   100819349   FACT complex subunit SSRP1 
 mtr-u.5   11407325   HMG1/2-like protein 
 mtr-u.5   11405962   high mobility group B protein 1 
 mtr-u.5   11437209   uncharacterized LOC11437209 
 ppo-u.5   7474442   high mobility group B protein 1 
 ppo-u.5   7462998   high mobility group B protein 14 
 ppo-u.5   7465590   high mobility group B protein 7 
 ath-u.5   AT5G23405   HMG-box (high mobility group) DNA-binding family protein 
 ath-u.5   HMGB3   high mobility group B3 
 ath-u.5   HMGB2   high mobility group B2 
 vvi-u.5   100246802   high mobility group B protein 1-like 
 vvi-u.5   100264012   high mobility group B protein 14 
 vvi-u.5   100257544   high mobility group B2 protein-like 
 sly-u.5   101247954   high mobility group B protein 1 
 sly-u.5   101257131   HMG1/2-like protein 
 sly-u.5   101247480   high mobility group B protein 14 
 osa-u.5   4330271   HMG1/2-like protein 
 osa-u.5   4344416   high mobility group B protein 7 
 osa-u.5   4326858   high mobility group B protein 14 
 zma-u.5   109944069   HMG1/2-like protein 
 zma-u.5   100284781   uncharacterized LOC100284781 

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Top 50 coexpressed genes to 100306558 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100306558 (gma-u.5 coexpression data)

CoexMap"100306558"


gmaLOC100306558 | Entrez gene ID : 100306558      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 3 3 3 3 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010197 [list] [network] polar nucleus fusion  (3 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (3517 genes)  IEA  
Protein NP_001236719.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 4,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001236719.1)
Subcellular
localization
TargetP
other 3  (predict for NP_001236719.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100306558

.
gma-r.7
for
100306558

.
gma-m.5
for
100306558

.
gma-u.5
for
100807979

.
gma-u.5
for
100820624

.
gma-u.5
for
100819349

.
mtr-u.5
for
11407325

.
mtr-u.5
for
11405962

.
mtr-u.5
for
11437209

.
ppo-u.5
for
7474442

.
ppo-u.5
for
7462998

.
ppo-u.5
for
7465590

.
ath-u.5
for
AT5G23405

.
ath-u.5
for
HMGB3

.
ath-u.5
for
HMGB2

.
vvi-u.5
for
100246802

.
vvi-u.5
for
100264012

.
vvi-u.5
for
100257544

.
sly-u.5
for
101247954

.
sly-u.5
for
101257131

.
sly-u.5
for
101247480

.
osa-u.5
for
4330271

.
osa-u.5
for
4344416

.
osa-u.5
for
4326858

.
zma-u.5
for
109944069

.
zma-u.5
for
100284781

.


Ortholog ID: 226
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot cit cit bdi bdi nta nta
Symbol HMGB2 HMGB3 LOC100499992 LOC100305957 LOC101247008 LOC101257131 LOC4330271 LOC4336676 LOC541952 LOC109944069 LOC103845936 LOC103854899 LOC100257544 LOC100246802 LOC7474442 LOC7488016 LOC25481021 LOC25485684 LOC123172882 LOC780567 LOC123402298 LOC123444045 LOC107922191 LOC107890968 LOC106345995 LOC106416143 CHLRE_11g480950v5 CHLRE_16g672300v5 LOC110436389 LOC110431028 LOC102583623 LOC102630695 HMG LOC100838667 LOC100821521 LOC107808275 LOC107781188
Function* high mobility group B2 high mobility group B3 uncharacterized LOC100499992 uncharacterized LOC100305957 high mobility group B protein 7 HMG1/2-like protein HMG1/2-like protein DNA-binding protein MNB1B nucleosome/chromatin assembly factor D HMG1/2-like protein high mobility group B protein 4 high mobility group B protein 7 high mobility group B2 protein-like high mobility group B protein 1-like high mobility group B protein 1 high mobility group B protein 1 uncharacterized LOC25481021 high mobility group B protein 7 HMG1/2-like protein DNA-binding protein MNB1B DNA-binding protein MNB1B-like high mobility group B protein 14 high mobility group B protein 3 high mobility group B protein 1 high mobility group B protein 4 high mobility group B protein 2 uncharacterized protein uncharacterized protein HMG1/2-like protein DNA-binding protein MNB1B HMG1/2-like protein high mobility group B protein 4 group B HMG-box protein DNA-binding protein MNB1B high mobility group B protein 7 HMG1/2-like protein HMG1/2-like protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa03040 Spliceosome 4
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 7
osa03010 Ribosome 6
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 6
zma03420 Nucleotide excision repair 3
zma03430 Mismatch repair 3
zma03440 Homologous recombination 2
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 8
zma00520 Amino sugar and nucleotide sugar metabolism 3
zma01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 5
bra03430 Mismatch repair 3
bra03420 Nucleotide excision repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00380 Tryptophan metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
tae01200 Carbon metabolism 3
tae04016 MAPK signaling pathway - plant 3
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03450 Non-homologous end-joining 2
bna00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 3
cre03410 Base excision repair 2
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 5
bdi03082 ATP-dependent chromatin remodeling 4
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 2
nta00260 Glycine, serine and threonine metabolism 2
nta01200 Carbon metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838658 838659 100499992 100305957 101247008 101257131 4330271 4336676 541952 109944069 103845936 103854899 100257544 100246802 7474442 7488016 25481021 25485684 123172882 780567 123402298 123444045 107922191 107890968 106345995 106416143 5722933 5721401 110436389 110431028 102583623 102630695 102577961 100838667 100821521 107808275 107781188
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