ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100382110	putative XH domain family protein
zma-r.6	100382110	putative XH domain family protein
zma-u.5	100279850	uncharacterized LOC100279850
zma-u.5	100383007	putative XH domain family protein
sbi-r.1	8058200	protein INVOLVED IN DE NOVO 2
sbi-r.1	8070401	factor of DNA methylation 1
osa-u.5	4329065	factor of DNA methylation 1
osa-u.5	4326595	protein INVOLVED IN DE NOVO 2
osa-u.5	4325982	protein INVOLVED IN DE NOVO 2
tae-r.2	123096464	factor of DNA methylation 1
tae-r.2	123078565	factor of DNA methylation 1
tae-r.2	123147378	factor of DNA methylation 1
hvu-r.1	123443902	factor of DNA methylation 1-like
hvu-r.1	123412222	factor of DNA methylation 1-like
hvu-r.1	123413430	protein INVOLVED IN DE NOVO 2-like
bdi-r.1	100845608	factor of DNA methylation 1
bdi-r.1	100845391	factor of DNA methylation 1
bdi-r.1	100844776	factor of DNA methylation 1
ath-u.5	IDN2	XH/XS domain-containing protein
ath-u.5	FDM2	XH/XS domain-containing protein
gma-u.5	100790829	factor of DNA methylation 1
gma-u.5	100798940	factor of DNA methylation 1
gma-u.5	100806029	protein INVOLVED IN DE NOVO 2
sly-u.5	101256002	protein INVOLVED IN DE NOVO 2
sly-u.5	101244470	factor of DNA methylation 1
bra-r.6	103830457	factor of DNA methylation 5
bra-r.6	103842874	factor of DNA methylation 1-like
bra-r.6	103872390	factor of DNA methylation 1
vvi-u.5	100260350	protein INVOLVED IN DE NOVO 2
vvi-u.5	100257549	factor of DNA methylation 1
vvi-u.5	100252420	factor of DNA methylation 1
ppo-u.5	7458138	protein INVOLVED IN DE NOVO 2
ppo-u.5	18102687	factor of DNA methylation 4
ppo-u.5	7478299	factor of DNA methylation 1
mtr-u.5	11440090	factor of DNA methylation 1
mtr-u.5	11425283	factor of DNA methylation 1
mtr-u.5	25489298	protein INVOLVED IN DE NOVO 2
ghi-r.1	107955128	protein INVOLVED IN DE NOVO 2
ghi-r.1	107900468	protein INVOLVED IN DE NOVO 2
ghi-r.1	107900469	protein INVOLVED IN DE NOVO 2
bna-r.1	125575041	protein INVOLVED IN DE NOVO 2-like
bna-r.1	125591286	factor of DNA methylation 1-like
bna-r.1	111198617	protein INVOLVED IN DE NOVO 2-like
sot-r.1	102598897	factor of DNA methylation 1-like
sot-r.1	102599221	factor of DNA methylation 1-like
sot-r.1	102585012	protein INVOLVED IN DE NOVO 2
cit-r.1	102620954	factor of DNA methylation 4
cit-r.1	102629124	factor of DNA methylation 1
cit-r.1	102629537	protein INVOLVED IN DE NOVO 2-like
nta-r.1	107774607	factor of DNA methylation 1
nta-r.1	107818569	factor of DNA methylation 4
nta-r.1	107818442	factor of DNA methylation 1-like

Top 50 coexpressed genes to 100382110 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100382110 (zma-u.5 coexpression data)

CoexMap"100382110"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0080188 [list] [network] gene silencing by siRNA-directed DNA methylation

(15 genes)

IEA

GO CC

GO MF

Protein

NP_001168342.1 [sequence] [blastp]
XP_035819000.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 4, cyto_nucl 4	(predict for NP_001168342.1)
nucl 4, cyto 4, cyto_nucl 4	(predict for XP_035819000.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001168342.1)
other 9	(predict for XP_035819000.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100382110	zma-r.6 for 100382110	zma-u.5 for 100279850	zma-u.5 for 100383007	sbi-r.1 for 8058200	sbi-r.1 for 8070401	osa-u.5 for 4329065	osa-u.5 for 4326595	osa-u.5 for 4325982	tae-r.2 for 123096464	tae-r.2 for 123078565	tae-r.2 for 123147378	hvu-r.1 for 123443902	hvu-r.1 for 123412222	hvu-r.1 for 123413430	bdi-r.1 for 100845608	bdi-r.1 for 100845391	bdi-r.1 for 100844776	ath-u.5 for IDN2	ath-u.5 for FDM2	gma-u.5 for 100790829	gma-u.5 for 100798940	gma-u.5 for 100806029	sly-u.5 for 101256002	sly-u.5 for 101244470	bra-r.6 for 103830457	bra-r.6 for 103842874	bra-r.6 for 103872390	vvi-u.5 for 100260350	vvi-u.5 for 100257549	vvi-u.5 for 100252420	ppo-u.5 for 7458138	ppo-u.5 for 18102687	ppo-u.5 for 7478299	mtr-u.5 for 11440090	mtr-u.5 for 11425283	mtr-u.5 for 25489298	ghi-r.1 for 107955128	ghi-r.1 for 107900468	ghi-r.1 for 107900469	bna-r.1 for 125575041	bna-r.1 for 125591286	bna-r.1 for 111198617	sot-r.1 for 102598897	sot-r.1 for 102599221	sot-r.1 for 102585012	cit-r.1 for 102620954	cit-r.1 for 102629124	cit-r.1 for 102629537	nta-r.1 for 107774607	nta-r.1 for 107818569	nta-r.1 for 107818442

Ortholog

Ortholog ID: 752

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

FDM2

FDM1

FDM5

Function^*

putative XH domain family protein

uncharacterized LOC100279850

putative XH domain family protein

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

factor of DNA methylation 1-like

protein INVOLVED IN DE NOVO 2-like

factor of DNA methylation 1-like

factor of DNA methylation 1

XH/XS domain-containing protein

factor of DNA methylation 1

kinesin-like protein KIF20B

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

factor of DNA methylation 1-like

factor of DNA methylation 1

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 4

factor of DNA methylation 1

factor of DNA methylation 4

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 4

factor of DNA methylation 1

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1-like

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 4

factor of DNA methylation 1

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

factor of DNA methylation 4

factor of DNA methylation 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	4
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	3
osa03008	Ribosome biogenesis in eukaryotes	2
osa03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2
hvu03030	DNA replication	2
hvu03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3
bdi00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03440	Homologous recombination	2
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	5
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00380	Tryptophan metabolism	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00620	Pyruvate metabolism	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	6
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00052	Galactose metabolism	2
nta00230	Purine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100382110

100279850

100383007

8058200

8070401

4329065

4326595

4325982

123091502

123061513

123443902

123413430

123443878

100845608

100845391

100821394

828016

838161

844418

100790829

102665742

100812353

101256002

101244470

103842874

103872390

103873124

100257549

100252420

100244410

7458138

18102687

7478299

11425283

25487893

107900468

107900469

107942441

106414893

106430807

106346801

102598897

102599221

102585012

102620954

102629124

102624060

107774607

107818569

107806269

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	3	3	3	3	2	3	2	3	3	3	3	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100382110 (zma-u.5 coexpression data)

Top 50 enrichment test to 100382110 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**