ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100382593	uncharacterized LOC100382593
zma-r.6	100382593	uncharacterized LOC100382593
zma-u.5	103651056	TOM1-like protein 6
zma-u.5	100501156	putative VHS/GAT domain containing family protein
zma-u.5	103630481	TOM1-like protein 6
sbi-r.1	8085408	vacuolar protein sorting-associated protein 27
sbi-r.1	8085373	TOM1-like protein 2
sbi-r.1	8062336	uncharacterized LOC8062336
osa-u.5	4325877	TOM1-like protein 9
osa-u.5	4327586	TOM1-like protein 6
osa-u.5	4328993	TOM1-like protein 9
tae-r.2	123060791	TOM1-like protein 9
tae-r.2	123062456	TOM1-like protein 6
tae-r.2	123096312	TOM1-like protein 3
hvu-r.1	123447909	TOM1-like protein 3
hvu-r.1	123452489	TOM1-like protein 9
hvu-r.1	123407324	TOM1-like protein 9
bdi-r.1	100820952	TOM1-like protein 3
bdi-r.1	100821721	TOM1-like protein 9
bdi-r.1	100821912	TOM1-like protein 9
ath-u.5	AT1G76970	Target of Myb protein 1
ath-u.5	AT2G38410	ENTH/VHS/GAT family protein
gma-u.5	100792343	TOM1-like protein 4
gma-u.5	100805762	TOM1-like protein 9
gma-u.5	100809022	TOM1-like protein 9
sly-u.5	101245325	TOM1-like protein 9
sly-u.5	101245875	TOM1-like protein 6
sly-u.5	101248528	TOM1-like protein 9
bra-r.6	103829377	TOM1-like protein 3
bra-r.6	103832153	TOM1-like protein 4
bra-r.6	103834515	TOM1-like protein 9
vvi-u.5	100249280	TOM1-like protein 9
vvi-u.5	100260765	TOM1-like protein 4
vvi-u.5	100267076	TOM1-like protein 6
ppo-u.5	7462937	TOM1-like protein 9
ppo-u.5	7495708	TOM1-like protein 9
ppo-u.5	7487353	TOM1-like protein 6
mtr-u.5	25490106	TOM1-like protein 9
mtr-u.5	25482251	TOM1-like protein 9
mtr-u.5	11432555	TOM1-like protein 6
ghi-r.1	107914138	TOM1-like protein 4
ghi-r.1	107906948	TOM1-like protein 9
ghi-r.1	107905229	TOM1-like protein 4
bna-r.1	111198224	TOM1-like protein 6
bna-r.1	106427900	TOM1-like protein 8
sot-r.1	102585872	TOM1-like protein 2
sot-r.1	102590302	TOM1-like protein 2
sot-r.1	102587814	TOM1-like protein 2
cit-r.1	102614457	TOM1-like protein 6
cit-r.1	102619497	TOM1-like protein 9
cit-r.1	102607336	TOM1-like protein 3
nta-r.1	107791855	TOM1-like protein 6
nta-r.1	107788727	TOM1-like protein 9
nta-r.1	107773767	TOM1-like protein 9

Top 50 coexpressed genes to 100382593 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100382593 (zma-u.5 coexpression data)

CoexMap"100382593"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0043328 [list] [network] protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway

(24 genes)

IEA

GO CC

GO MF

GO:0043130 [list] [network] ubiquitin binding	(72 genes)	IEA
GO:0035091 [list] [network] phosphatidylinositol binding	(92 genes)	IEA

Protein

NP_001168794.1 [sequence] [blastp]
XP_008648085.3 [sequence] [blastp]
XP_035815592.1 [sequence] [blastp]
XP_035815593.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 4	(predict for NP_001168794.1)
chlo 4, nucl 4, cyto 1, mito 1, cysk 1	(predict for XP_008648085.3)
nucl 5, chlo 4, cyto 1, cysk 1	(predict for XP_035815592.1)
nucl 9	(predict for XP_035815593.1)

Subcellular
localization
TargetP

other 8, scret 3	(predict for NP_001168794.1)
chlo 8	(predict for XP_008648085.3)
chlo 8	(predict for XP_035815592.1)
other 8	(predict for XP_035815593.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100382593	zma-r.6 for 100382593	zma-u.5 for 103651056	zma-u.5 for 100501156	zma-u.5 for 103630481	sbi-r.1 for 8085408	sbi-r.1 for 8085373	sbi-r.1 for 8062336	osa-u.5 for 4325877	osa-u.5 for 4327586	osa-u.5 for 4328993	tae-r.2 for 123060791	tae-r.2 for 123062456	tae-r.2 for 123096312	hvu-r.1 for 123447909	hvu-r.1 for 123452489	hvu-r.1 for 123407324	bdi-r.1 for 100820952	bdi-r.1 for 100821721	bdi-r.1 for 100821912	ath-u.5 for AT1G76970	ath-u.5 for AT2G38410	gma-u.5 for 100792343	gma-u.5 for 100805762	gma-u.5 for 100809022	sly-u.5 for 101245325	sly-u.5 for 101245875	sly-u.5 for 101248528	bra-r.6 for 103829377	bra-r.6 for 103832153	bra-r.6 for 103834515	vvi-u.5 for 100249280	vvi-u.5 for 100260765	vvi-u.5 for 100267076	ppo-u.5 for 7462937	ppo-u.5 for 7495708	ppo-u.5 for 7487353	mtr-u.5 for 25490106	mtr-u.5 for 25482251	mtr-u.5 for 11432555	ghi-r.1 for 107914138	ghi-r.1 for 107906948	ghi-r.1 for 107905229	bna-r.1 for 111198224	bna-r.1 for 106427900	sot-r.1 for 102585872	sot-r.1 for 102590302	sot-r.1 for 102587814	cit-r.1 for 102614457	cit-r.1 for 102619497	cit-r.1 for 102607336	nta-r.1 for 107791855	nta-r.1 for 107788727	nta-r.1 for 107773767

Ortholog

Ortholog ID: 420

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

protein transporter

VHS and GAT domain protein

uncharacterized LOC100281721

TOM1-like protein 2

uncharacterized LOC8062336

target of Myb protein 1

TOM1-like protein 9

TOM1-like protein 6

TOM1-like protein 3

TOM1-like protein 9

TOM1-like protein 6

TOM1-like protein 9

TOM1-like protein 6

TOM1-like protein 7

TOM1-like protein 9

TOM1-like protein 6

TOM1-like protein 9

Target of Myb protein 1

TOM1-like protein 4

TOM1-like protein 9

TOM1-like protein 4

TOM1-like protein 9

TOM1-like protein 3

TOM1-like protein 4

TOM1-like protein 9

TOM1-like protein 4

TOM1-like protein 6

TOM1-like protein 9

TOM1-like protein 6

TOM1-like protein 9

TOM1-like protein 6

TOM1-like protein 3

TOM1-like protein 6

TOM1-like protein 9

TOM1-like protein 4

TOM1-like protein 9

TOM1-like protein 6

TOM1-like protein 2

target of Myb protein 1

TOM1-like protein 6

TOM1-like protein 9

TOM1-like protein 3

TOM1-like protein 9

TOM1-like protein 6

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04070	Phosphatidylinositol signaling system	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	3
zma04016	MAPK signaling pathway - plant	2
zma03250	Viral life cycle - HIV-1	2
zma03272	Virion - Hepatitis viruses	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00760	Nicotinate and nicotinamide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3
osa00260	Glycine, serine and threonine metabolism	2
osa00670	One carbon pool by folate	2
osa04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	8
tae04016	MAPK signaling pathway - plant	5
tae04626	Plant-pathogen interaction	5
tae04070	Phosphatidylinositol signaling system	3
tae00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi00440	Phosphonate and phosphinate metabolism	2
bdi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath00020	Citrate cycle (TCA cycle)	3
ath01200	Carbon metabolism	3
ath00190	Oxidative phosphorylation	3
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	3
gma04144	Endocytosis	3
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma03250	Viral life cycle - HIV-1	2
gma03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	3
gma00510	N-Glycan biosynthesis	2
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	3
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi04382	Cornified envelope formation	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04626	Plant-pathogen interaction	3
mtr04016	MAPK signaling pathway - plant	2
mtr04075	Plant hormone signal transduction	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	3
bna00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	3
bna00600	Sphingolipid metabolism	3
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04142	Lysosome	3
cit04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta04144	Endocytosis	2
nta04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta04144	Endocytosis	2
nta04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00071	Fatty acid degradation	2
nta00410	beta-Alanine metabolism	2
nta00592	alpha-Linolenic acid metabolism	2
nta00640	Propanoate metabolism	2
nta01040	Biosynthesis of unsaturated fatty acids	2

Expression

Expression pattern

Entrez Gene ID^*

100285221

100281176

100281721

8085373

8062336

8078110

4328993

4338463

4350004

123117069

123071245

123182360

123443250

123444789

123445007

100821912

100824684

100844962

844033

838737

100792343

100809022

100795713

101245325

101248528

101253775

103829377

103832153

100249280

100260765

100267076

7462937

7495708

7487353

25482251

11432555

25489734

107903521

107915015

107955979

106377224

106365959

106450950

102585872

102590302

102582428

102614457

102619497

102607336

107773767

107827293

107796556

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	3	3	3	3	3	2	3	3	3	3	3	3	3	2	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100382593 (zma-u.5 coexpression data)

Top 50 enrichment test to 100382593 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**