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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100382705   Probable signal recognition particle 43 kDa protein, chloroplastic-like 
 zma-r.6   100382705   Probable signal recognition particle 43 kDa protein, chloroplastic-like 
 zma-m.5   100382705   Probable signal recognition particle 43 kDa protein, chloroplastic-like 
 sbi-r.1   8057424   probable signal recognition particle 43 kDa protein, chloroplastic 
 osa-u.5   4331514   probable signal recognition particle 43 kDa protein, chloroplastic 
 tae-r.2   123098881   probable signal recognition particle 43 kDa protein, chloroplastic 
 tae-r.2   123105814   probable signal recognition particle 43 kDa protein, chloroplastic 
 tae-r.2   123093610   probable signal recognition particle 43 kDa protein, chloroplastic 
 hvu-r.1   123447310   probable signal recognition particle 43 kDa protein, chloroplastic 
 ath-u.5   CAO   chloroplast signal recognition particle component (CAO) 
 gma-u.5   100818382   signal recognition particle 43 kDa protein, chloroplastic 
 sly-u.5   101263960   signal recognition particle 43 kDa protein, chloroplastic 
 bra-r.6   103833041   signal recognition particle 43 kDa protein, chloroplastic 
 vvi-u.5   100243569   signal recognition particle 43 kDa protein, chloroplastic 
 ppo-u.5   7472092   signal recognition particle 43 kDa protein, chloroplastic 
 mtr-u.5   25492861   signal recognition particle 43 kDa protein, chloroplastic 
 ghi-r.1   107908634   signal recognition particle 43 kDa protein, chloroplastic 
 ghi-r.1   107927956   signal recognition particle 43 kDa protein, chloroplastic 
 bna-r.1   125591657   signal recognition particle 43 kDa protein, chloroplastic-like 
 bna-r.1   111212765   signal recognition particle 43 kDa protein, chloroplastic 
 sot-r.1   102601192   signal recognition particle 43 kDa protein, chloroplastic 
 cit-r.1   102607185   signal recognition particle 43 kDa protein, chloroplastic 
 nta-r.1   107768293   signal recognition particle 43 kDa protein, chloroplastic-like 
 nta-r.1   107761768   signal recognition particle 43 kDa protein, chloroplastic 
 cre-r.1   CHLRE_17g702250v5   uncharacterized protein 
 cre-r.1   CHLRE_04g231026v5   uncharacterized protein 

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Top 50 coexpressed genes to 100382705 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100382705 (zma-u.5 coexpression data)

CoexMap"100382705"


zmaLOC100382705 | Entrez gene ID : 100382705      
Species zma sbi osa tae hvu ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre bdi
Paralog 3 1 1 3 1 1 1 1 1 1 1 1 2 2 1 1 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0085020 [list] [network] protein K6-linked ubiquitination  (4 genes)  IEA  
GO CC
GO:0031436 [list] [network] BRCA1-BARD1 complex  (7 genes)  IEA  
GO:0070531 [list] [network] BRCA1-A complex  (9 genes)  IEA  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (430 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4389 genes)  IEA  
Protein NP_001168899.2 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  chlo_mito 5,  chlo 4  (predict for NP_001168899.2)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001168899.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100382705
zma-r.6
for
100382705
zma-m.5
for
100382705
sbi-r.1
for
8057424
osa-u.5
for
4331514
tae-r.2
for
123098881
tae-r.2
for
123105814
tae-r.2
for
123093610
hvu-r.1
for
123447310
ath-u.5
for
CAO
gma-u.5
for
100818382
sly-u.5
for
101263960
bra-r.6
for
103833041
vvi-u.5
for
100243569
ppo-u.5
for
7472092
mtr-u.5
for
25492861
ghi-r.1
for
107908634
ghi-r.1
for
107927956
bna-r.1
for
125591657
bna-r.1
for
111212765
sot-r.1
for
102601192
cit-r.1
for
102607185
nta-r.1
for
107768293
nta-r.1
for
107761768
cre-r.1
for
CHLRE_17g702250v5
cre-r.1
for
CHLRE_04g231026v5


Ortholog ID: 8920
Species zma sbi osa tae tae tae hvu ath gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre cre
Symbol LOC100382705 LOC8057424 LOC4331514 LOC123098881 LOC123105814 LOC123093610 LOC123447310 CAO LOC100818382 LOC101263960 LOC103833041 LOC100243569 LOC7472092 LOC25492861 LOC107908634 LOC107927956 LOC125591657 LOC111212765 LOC102601192 LOC102607185 LOC107768293 LOC107761768 CHLRE_17g702250v5 CHLRE_04g231026v5
Function* Probable signal recognition particle 43 kDa protein, chloroplastic-like probable signal recognition particle 43 kDa protein, chloroplastic probable signal recognition particle 43 kDa protein, chloroplastic probable signal recognition particle 43 kDa protein, chloroplastic probable signal recognition particle 43 kDa protein, chloroplastic probable signal recognition particle 43 kDa protein, chloroplastic probable signal recognition particle 43 kDa protein, chloroplastic chloroplast signal recognition particle component (CAO) signal recognition particle 43 kDa protein, chloroplastic signal recognition particle 43 kDa protein, chloroplastic signal recognition particle 43 kDa protein, chloroplastic signal recognition particle 43 kDa protein, chloroplastic signal recognition particle 43 kDa protein, chloroplastic signal recognition particle 43 kDa protein, chloroplastic signal recognition particle 43 kDa protein, chloroplastic signal recognition particle 43 kDa protein, chloroplastic signal recognition particle 43 kDa protein, chloroplastic-like signal recognition particle 43 kDa protein, chloroplastic signal recognition particle 43 kDa protein, chloroplastic signal recognition particle 43 kDa protein, chloroplastic signal recognition particle 43 kDa protein, chloroplastic-like signal recognition particle 43 kDa protein, chloroplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 3
zma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 3
osa00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 6
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 3
gma00900 Terpenoid backbone biosynthesis 2
gma04626 Plant-pathogen interaction 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 4
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra00195 Photosynthesis 2
bra00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 6
vvi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00860 Porphyrin metabolism 3
ppo00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta00195 Photosynthesis 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03060 Protein export 3
cre00860 Porphyrin metabolism 3
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100382705 8057424 4331514 123098881 123105814 123093610 123447310 819358 100818382 101263960 103833041 100243569 7472092 25492861 107908634 107927956 125591657 111212765 102601192 102607185 107768293 107761768 5717284 5729233
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