ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100383325	uncharacterized LOC100383325
zma-r.6	100383325	uncharacterized LOC100383325
zma-m.5	100383325	uncharacterized LOC100383325
zma-u.5	100192893	uncharacterized LOC100192893
zma-u.5	100191951	putative protein kinase superfamily protein
zma-u.5	100383830	uncharacterized LOC100383830
sbi-r.1	8068131	probable serine/threonine-protein kinase At1g54610
sbi-r.1	8060631	probable serine/threonine-protein kinase At1g54610
osa-u.5	4343794	protein IMPAIRED IN BABA-INDUCED STERILITY 1
osa-u.5	4352620	probable serine/threonine-protein kinase At1g54610
tae-r.2	123044340	protein IMPAIRED IN BABA-INDUCED STERILITY 1
tae-r.2	123052206	protein IMPAIRED IN BABA-INDUCED STERILITY 1
tae-r.2	123110626	protein IMPAIRED IN BABA-INDUCED STERILITY 1
hvu-r.1	123425457	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
hvu-r.1	123399083	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
bdi-r.1	100822826	protein IMPAIRED IN BABA-INDUCED STERILITY 1
bdi-r.1	100833133	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ath-u.5	cdc2cAt	CDC2C
ath-u.5	IBS1	Protein kinase superfamily protein
ath-u.5	AT1G74330	Protein kinase superfamily protein
gma-u.5	100790917	protein IMPAIRED IN BABA-INDUCED STERILITY 1
gma-u.5	100803328	protein IMPAIRED IN BABA-INDUCED STERILITY 1
gma-u.5	100816047	protein IMPAIRED IN BABA-INDUCED STERILITY 1
sly-u.5	101257252	protein IMPAIRED IN BABA-INDUCED STERILITY 1
sly-u.5	101246005	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
bra-r.6	103863843	protein IMPAIRED IN BABA-INDUCED STERILITY 1
bra-r.6	103835889	protein IMPAIRED IN BABA-INDUCED STERILITY 1
vvi-u.5	100268091	protein IMPAIRED IN BABA-INDUCED STERILITY 1
vvi-u.5	100852764	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ppo-u.5	7487133	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ppo-u.5	7495996	cyclin-dependent kinase C-2 C
ppo-u.5	18105782	protein IMPAIRED IN BABA-INDUCED STERILITY 1
mtr-u.5	25493849	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ghi-r.1	107886108	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ghi-r.1	107888566	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ghi-r.1	107931506	protein IMPAIRED IN BABA-INDUCED STERILITY 1
bna-r.1	106453934	protein IMPAIRED IN BABA-INDUCED STERILITY 1
sot-r.1	102600852	probable serine/threonine-protein kinase At1g54610
sot-r.1	102605724	probable serine/threonine-protein kinase At1g54610
cit-r.1	102627065	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
nta-r.1	107792281	protein IMPAIRED IN BABA-INDUCED STERILITY 1
nta-r.1	107772072	protein IMPAIRED IN BABA-INDUCED STERILITY 1
nta-r.1	107775675	protein IMPAIRED IN BABA-INDUCED STERILITY 1

Top 50 coexpressed genes to 100383325 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100383325 (zma-u.5 coexpression data)

CoexMap"100383325"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0032968 [list] [network] positive regulation of transcription elongation by RNA polymerase II	(28 genes)	IEA
GO:0006468 [list] [network] protein phosphorylation	(1372 genes)	IEA

GO CC

GO:0000307 [list] [network] cyclin-dependent protein kinase holoenzyme complex	(44 genes)	IEA
GO:0005634 [list] [network] nucleus	(3371 genes)	IEA

GO MF

GO:0008353 [list] [network] RNA polymerase II CTD heptapeptide repeat kinase activity	(25 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2473 genes)	IEA

Protein

NP_001169454.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, nucl 1, mito 1, cysk 1, cyto_nucl 1, nucl_plas 1

(predict for NP_001169454.1)

Subcellular
localization
TargetP

chlo 7

(predict for NP_001169454.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100383325	zma-r.6 for 100383325	zma-m.5 for 100383325	zma-u.5 for 100192893	zma-u.5 for 100191951	zma-u.5 for 100383830	sbi-r.1 for 8068131	sbi-r.1 for 8060631	osa-u.5 for 4343794	osa-u.5 for 4352620	tae-r.2 for 123044340	tae-r.2 for 123052206	tae-r.2 for 123110626	hvu-r.1 for 123425457	hvu-r.1 for 123399083	bdi-r.1 for 100822826	bdi-r.1 for 100833133	ath-u.5 for cdc2cAt	ath-u.5 for IBS1	ath-u.5 for AT1G74330	gma-u.5 for 100790917	gma-u.5 for 100803328	gma-u.5 for 100816047	sly-u.5 for 101257252	sly-u.5 for 101246005	bra-r.6 for 103863843	bra-r.6 for 103835889	vvi-u.5 for 100268091	vvi-u.5 for 100852764	ppo-u.5 for 7487133	ppo-u.5 for 7495996	ppo-u.5 for 18105782	mtr-u.5 for 25493849	ghi-r.1 for 107886108	ghi-r.1 for 107888566	ghi-r.1 for 107931506	bna-r.1 for 106453934	sot-r.1 for 102600852	sot-r.1 for 102605724	cit-r.1 for 102627065	nta-r.1 for 107792281	nta-r.1 for 107772072	nta-r.1 for 107775675

Ortholog

Ortholog ID: 2176

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

cdc2cAt

IBS1

Function^*

uncharacterized LOC100383325

uncharacterized LOC100192893

uncharacterized LOC100383830

probable serine/threonine-protein kinase At1g54610