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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100499860   uncharacterized LOC100499860 
 gma-r.7   100499860   uncharacterized LOC100499860 
 gma-m.5   100499860   uncharacterized LOC100499860 
 gma-u.5   100780342   DNA-directed RNA polymerases II, IV and V subunit 8B 
 gma-u.5   100806909   DNA-directed RNA polymerases II, IV and V subunit 8B 
 gma-u.5   100816388   DNA-directed RNA polymerases I, II, and III subunit RPABC3-like 
 mtr-u.5   11441441   DNA-directed RNA polymerases II and V subunit 8A 
 mtr-u.5   11442457   DNA-directed RNA polymerases II and V subunit 8A 
 mtr-u.5   25483690   DNA-directed RNA polymerases II, IV and V subunit 8B 
 ppo-u.5   7482406   tubulin-folding cofactor A 
 ppo-u.5   18104533   DNA-directed RNA polymerases II, IV and V subunit 8B 
 ath-u.5   NRPB8B   RNA polymerase Rpb8 
 ath-u.5   NRPB8A   RNA polymerase Rpb8 
 bra-r.6   103841806   DNA-directed RNA polymerases II, IV and V subunit 8B 
 vvi-u.5   100249225   DNA-directed RNA polymerases II and V subunit 8A 
 vvi-u.5   100254322   DNA-directed RNA polymerases II and V subunit 8A 
 ghi-r.1   107941303   DNA-directed RNA polymerases II, IV and V subunit 8B 
 ghi-r.1   107932634   DNA-directed RNA polymerases II, IV and V subunit 8B 
 bna-r.1   106368445   DNA-directed RNA polymerases II, IV and V subunit 8B 
 bna-r.1   111208524   DNA-directed RNA polymerases II, IV and V subunit 8B 
 cit-r.1   102625354   DNA-directed RNA polymerases II and V subunit 8A 
 sly-u.5   101254169   DNA-directed RNA polymerases II and V subunit 8A 
 sot-r.1   102594913   DNA-directed RNA polymerases II, IV and V subunit 8B-like 
 sot-r.1   102590066   DNA-directed RNA polymerases II and V subunit 8A-like 
 nta-r.1   107815072   DNA-directed RNA polymerases II and V subunit 8A 
 nta-r.1   107801754   DNA-directed RNA polymerases II, IV and V subunit 8B 
 nta-r.1   107796905   DNA-directed RNA polymerases II, IV and V subunit 8B 
 osa-u.5   4341946   DNA-directed RNA polymerases II, IV and V subunit 8B 
 osa-u.5   4334766   DNA-directed RNA polymerases II, IV and V subunit 8B 
 zma-u.5   100281008   uncharacterized LOC100281008 
 tae-r.2   123187520   DNA-directed RNA polymerases II, IV and V subunit 8B 
 tae-r.2   123043727   DNA-directed RNA polymerases II, IV and V subunit 8B 
 hvu-r.1   123424749   DNA-directed RNA polymerases II, IV and V subunit 8B-like 
 sbi-r.1   8080154   DNA-directed RNA polymerases II, IV and V subunit 8B 
 sbi-r.1   8060881   DNA-directed RNA polymerases II, IV and V subunit 8B 
 bdi-r.1   100837358   DNA-directed RNA polymerases II, IV and V subunit 8B 
 bdi-r.1   100842614   DNA-directed RNA polymerases II, IV and V subunit 8B 
 cre-r.1   CHLRE_02g102800v5   uncharacterized protein 

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Top 50 coexpressed genes to 100499860 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100499860 (gma-u.5 coexpression data)

CoexMap"100499860"


gmaLOC100499860 | Entrez gene ID : 100499860      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 6 3 2 2 1 2 2 2 1 1 2 3 2 1 2 1 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03020 [list] [network] RNA polymerase (81 genes)
gmx03420 [list] [network] Nucleotide excision repair (129 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (402 genes)  IEA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (27 genes)  IEA  
GO:0005665 [list] [network] RNA polymerase II, core complex  (38 genes)  IEA  
GO:0005666 [list] [network] RNA polymerase III complex  (45 genes)  IEA  
GO MF
Protein NP_001237035.1 [sequence] [blastp]
XP_006574344.1 [sequence] [blastp]
XP_006574345.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cyto_nucl 3,  cyto_E.R. 3,  extr 1,  chlo 1,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_001237035.1)
cyto 6,  cyto_nucl 3,  cyto_E.R. 3,  extr 1,  chlo 1,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_006574344.1)
cyto 6,  cyto_nucl 3,  cyto_E.R. 3,  extr 1,  chlo 1,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_006574345.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001237035.1)
other 9  (predict for XP_006574344.1)
other 9  (predict for XP_006574345.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100499860
gma-r.7
for
100499860
gma-m.5
for
100499860
gma-u.5
for
100780342
gma-u.5
for
100806909
gma-u.5
for
100816388
mtr-u.5
for
11441441
mtr-u.5
for
11442457
mtr-u.5
for
25483690
ppo-u.5
for
7482406
ppo-u.5
for
18104533
ath-u.5
for
NRPB8B
ath-u.5
for
NRPB8A
bra-r.6
for
103841806
vvi-u.5
for
100249225
vvi-u.5
for
100254322
ghi-r.1
for
107941303
ghi-r.1
for
107932634
bna-r.1
for
106368445
bna-r.1
for
111208524
cit-r.1
for
102625354
sly-u.5
for
101254169
sot-r.1
for
102594913
sot-r.1
for
102590066
nta-r.1
for
107815072
nta-r.1
for
107801754
nta-r.1
for
107796905
osa-u.5
for
4341946
osa-u.5
for
4334766
zma-u.5
for
100281008
tae-r.2
for
123187520
tae-r.2
for
123043727
hvu-r.1
for
123424749
sbi-r.1
for
8080154
sbi-r.1
for
8060881
bdi-r.1
for
100837358
bdi-r.1
for
100842614
cre-r.1
for
CHLRE_02g102800v5


Ortholog ID: 3594
Species gma gma gma mtr mtr mtr ppo ppo ath ath bra vvi vvi ghi ghi bna bna cit sly sot sot nta nta nta osa osa zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol LOC100499860 LOC100780342 LOC100816388 LOC11441441 LOC11442457 LOC25483690 LOC7482406 LOC18104533 NRPB8B NRPB8A LOC103841806 LOC100249225 LOC100254322 LOC107941303 LOC121213756 LOC106368445 LOC111208524 LOC102625354 LOC101254169 LOC102594913 LOC102590066 LOC107815072 LOC107801754 LOC107771156 LOC4341946 LOC4334766 LOC100281008 LOC123187520 LOC123043727 LOC123051584 LOC123424749 LOC8080154 LOC8060881 LOC100837358 LOC100842614 CHLRE_02g102800v5
Function* uncharacterized LOC100499860 DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases I, II, and III subunit RPABC3-like DNA-directed RNA polymerases II and V subunit 8A DNA-directed RNA polymerases II and V subunit 8A DNA-directed RNA polymerases II, IV and V subunit 8B tubulin-folding cofactor A DNA-directed RNA polymerases II, IV and V subunit 8B RNA polymerase Rpb8 RNA polymerase Rpb8 DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II and V subunit 8A DNA-directed RNA polymerases II and V subunit 8A DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II and V subunit 8A DNA-directed RNA polymerases II and V subunit 8A DNA-directed RNA polymerases II, IV and V subunit 8B-like DNA-directed RNA polymerases II and V subunit 8A-like DNA-directed RNA polymerases II and V subunit 8A DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II and V subunit 8A-like DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B uncharacterized LOC100281008 DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B-like DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 3
gma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03420 Nucleotide excision repair 2
gma03020 RNA polymerase 2
gma03018 RNA degradation 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr03420 Nucleotide excision repair 4
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 4
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 5
ath03018 RNA degradation 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
ath03018 RNA degradation 2
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra04141 Protein processing in endoplasmic reticulum 2
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03420 Nucleotide excision repair 2
vvi03010 Ribosome 2
vvi03030 DNA replication 2
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 11
vvi00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi03020 RNA polymerase 3
ghi03420 Nucleotide excision repair 3
ghi00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi03020 RNA polymerase 3
ghi03420 Nucleotide excision repair 3
ghi04075 Plant hormone signal transduction 2
ghi00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna03040 Spliceosome 3
bna00260 Glycine, serine and threonine metabolism 3
bna00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna03018 RNA degradation 2
bna03040 Spliceosome 2
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
cit03020 RNA polymerase 2
cit03420 Nucleotide excision repair 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 3
sly03040 Spliceosome 3
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 3
sot03420 Nucleotide excision repair 3
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 12
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00030 Pentose phosphate pathway 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
sbi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 3
sbi03420 Nucleotide excision repair 3
sbi03040 Spliceosome 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi03420 Nucleotide excision repair 4
bdi03020 RNA polymerase 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03050 Proteasome 4
bdi03420 Nucleotide excision repair 3
bdi00020 Citrate cycle (TCA cycle) 2
bdi00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 5
cre03420 Nucleotide excision repair 4
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100499860 100780342 100816388 11441441 11442457 25483690 7482406 18104533 825129 841866 103841806 100249225 100254322 107941303 121213756 106368445 111208524 102625354 101254169 102594913 102590066 107815072 107801754 107771156 4341946 4334766 100281008 123187520 123043727 123051584 123424749 8080154 8060881 100837358 100842614 5725551
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