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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   UPB1   transcription factor UPBEAT protein 
 bra-r.6   103866390   transcription factor UPBEAT1 
 bra-r.6   103852640   uncharacterized LOC103852640 
 vvi-u.5   100855136   transcription factor UPBEAT1 
 ghi-r.1   107886604   transcription factor PAR1 
 bna-r.1   106454406   transcription factor UPBEAT1-like 
 cit-r.1   102615740   transcription factor IBH1-like 
 osa-u.5   4345571   transcription factor IBH1-like 
 zma-u.5   100381914   uncharacterized LOC100381914 
 zma-u.5   100277208   uncharacterized LOC100277208 
 zma-u.5   100276975   transcription factor UPBEAT1 
 tae-r.2   123107007   transcription factor bHLH150 
 tae-r.2   123124843   uncharacterized LOC123124843 
 tae-r.2   123124755   transcription factor bHLH150 
 hvu-r.1   123398258   uncharacterized LOC123398258 
 sbi-r.1   8056003   uncharacterized LOC8056003 

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Top 50 coexpressed genes to UPB1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to UPB1 (ath-u.5 coexpression data)

CoexMap"100527452"


gmaLOC100527452 | Entrez gene ID : 100527452      
Species ath bra vvi ghi bna cit osa zma tae hvu sbi gma sot cre ppo sly nta mtr bdi
Paralog 1 2 1 1 1 1 1 3 3 1 1 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (3122 genes)  IEA  
GO CC
GO MF
Protein NP_001236272.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 4,  cyto_nucl 2,  vacu 1  (predict for NP_001236272.2)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001236272.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
UPB1
bra-r.6
for
103866390
bra-r.6
for
103852640
vvi-u.5
for
100855136
ghi-r.1
for
107886604
bna-r.1
for
106454406
cit-r.1
for
102615740
osa-u.5
for
4345571
zma-u.5
for
100381914
zma-u.5
for
100277208
zma-u.5
for
100276975
tae-r.2
for
123107007
tae-r.2
for
123124843
tae-r.2
for
123124755
hvu-r.1
for
123398258
sbi-r.1
for
8056003


Ortholog ID: 3788
Species ath bra bra vvi ghi bna cit osa zma zma zma tae tae hvu sbi
Symbol UPB1 LOC103866390 LOC103852640 LOC100855136 LOC107886604 LOC106394886 LOC102615740 LOC4345571 LOC100381914 LOC100277208 LOC100275319 LOC123124755 LOC123116126 LOC123398258 LOC8056003
Function* transcription factor UPBEAT protein transcription factor UPBEAT1 uncharacterized LOC103852640 transcription factor UPBEAT1 transcription factor PAR1 transcription factor UPBEAT1 transcription factor IBH1-like transcription factor IBH1-like uncharacterized LOC100381914 uncharacterized LOC100277208 uncharacterized LOC100275319 transcription factor bHLH150 transcription factor bHLH150 uncharacterized LOC123398258 uncharacterized LOC8056003
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 5
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00460 Cyanoamino acid metabolism 2
ghi00500 Starch and sucrose metabolism 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 3
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00270 Cysteine and methionine metabolism 2
hvu00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819340 103866390 103852640 100855136 107886604 106394886 102615740 4345571 100381914 100277208 100275319 123124755 123116126 123398258 8056003
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