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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100776016   general transcription and DNA repair factor IIH subunit TFB1-1 
 gma-r.7   100776016   general transcription and DNA repair factor IIH subunit TFB1-1 
 gma-m.5   100776016   general transcription and DNA repair factor IIH subunit TFB1-1 
 gma-u.5   100811780   general transcription and DNA repair factor IIH subunit TFB1-1 
 mtr-u.5   11406928   general transcription and DNA repair factor IIH subunit TFB1-1 
 mtr-u.5   25496637   general transcription and DNA repair factor IIH subunit TFB1-1 
 ppo-u.5   7466730   general transcription and DNA repair factor IIH subunit TFB1-1 
 ath-u.5   AT3G61420   BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) 
 ath-u.5   AT1G55750   BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) 
 vvi-u.5   100249755   general transcription and DNA repair factor IIH subunit TFB1-1 
 sly-u.5   101251518   general transcription and DNA repair factor IIH subunit TFB1-1 
 osa-u.5   4345313   general transcription and DNA repair factor IIH subunit TFB1-1 
 zma-u.5   100193949   uncharacterized LOC100193949 

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Top 50 coexpressed genes to 100776016 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100776016 (gma-u.5 coexpression data)

CoexMap"100776016"


gmaLOC100776016 | Entrez gene ID : 100776016      
Species gma mtr ppo ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 4 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03022 [list] [network] Basal transcription factors (90 genes)
gmx03420 [list] [network] Nucleotide excision repair (129 genes)
GO BP
GO:0006360 [list] [network] transcription by RNA polymerase I  (21 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (130 genes)  IEA  
GO:0006366 [list] [network] transcription by RNA polymerase II  (130 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (11 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (22 genes)  IEA  
GO MF
Protein XP_003556327.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 8,  nucl 1  (predict for XP_003556327.1)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for XP_003556327.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100776016

.
gma-r.7
for
100776016

.
gma-m.5
for
100776016

.
gma-u.5
for
100811780

.
mtr-u.5
for
11406928

.
mtr-u.5
for
25496637

.
ppo-u.5
for
7466730

.
ath-u.5
for
AT3G61420

.
ath-u.5
for
AT1G55750

.
vvi-u.5
for
100249755

.
sly-u.5
for
101251518

.
osa-u.5
for
4345313

.
zma-u.5
for
100193949

.


Ortholog ID: 7262
Species ath ath gma gma sly osa zma vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G55750 AT3G61420 LOC100811780 LOC100776016 LOC101251518 LOC4345313 LOC100193949 LOC100249755 LOC7466730 LOC25496637 LOC11406928 LOC123080216 LOC123147380 LOC123445165 LOC123408345 LOC107941978 LOC107953138 LOC106354485 LOC106393558 CHLRE_10g466550v5 LOC8076584 LOC102603411 LOC102606944 LOC100845916 LOC107773286 LOC107788649
Function* BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 uncharacterized LOC100193949 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-3-like general transcription and DNA repair factor IIH subunit TFB1-1-like general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 uncharacterized protein probable RNA polymerase II transcription factor B subunit 1-1 probable RNA polymerase II transcription factor B subunit 1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1-like general transcription and DNA repair factor IIH subunit TFB1-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 5
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03022 Basal transcription factors 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
zma03420 Nucleotide excision repair 2
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03022 Basal transcription factors 4
tae03420 Nucleotide excision repair 4
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 4
bna04518 Integrin signaling 4
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 4
bna04518 Integrin signaling 4
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03083 Polycomb repressive complex 2
nta03082 ATP-dependent chromatin remodeling 2
nta03013 Nucleocytoplasmic transport 2
nta00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03083 Polycomb repressive complex 2
nta03082 ATP-dependent chromatin remodeling 2
nta03013 Nucleocytoplasmic transport 2
nta00330 Arginine and proline metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842024 825315 100811780 100776016 101251518 4345313 100193949 100249755 7466730 25496637 11406928 123080216 123147380 123445165 123408345 107941978 107953138 106354485 106393558 5724197 8076584 102603411 102606944 100845916 107773286 107788649
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