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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100776123   putative tRNA pseudouridine synthase 
 gma-r.7   100776123   putative tRNA pseudouridine synthase 
 gma-u.5   100791132   putative tRNA pseudouridine synthase 
 gma-u.5   100776655   putative tRNA pseudouridine synthase 
 mtr-u.5   11410109   putative tRNA pseudouridine synthase 
 mtr-u.5   11416983   putative tRNA pseudouridine synthase 
 ppo-u.5   7497427   putative tRNA pseudouridine synthase 
 ath-u.5   AT2G30320   Pseudouridine synthase family protein 
 vvi-u.5   100241658   putative tRNA pseudouridine synthase 
 sly-u.5   109119442   putative tRNA pseudouridine synthase 
 sly-u.5   101259073   putative tRNA pseudouridine synthase 
 osa-u.5   4332779   putative tRNA pseudouridine synthase 
 zma-u.5   100193430   Putative tRNA pseudouridine synthase 

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Top 50 coexpressed genes to 100776123 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100776123 (gma-u.5 coexpression data)

CoexMap"100776123"


gmaLOC100776123 | Entrez gene ID : 100776123      
Species gma mtr ppo ath vvi sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 4 2 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (13 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (28 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
Protein XP_003518334.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 4,  cyto 1,  mito 1  (predict for XP_003518334.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_003518334.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100776123
gma-r.7
for
100776123
gma-u.5
for
100791132
gma-u.5
for
100776655
mtr-u.5
for
11410109
mtr-u.5
for
11416983
ppo-u.5
for
7497427
ath-u.5
for
AT2G30320
vvi-u.5
for
100241658
sly-u.5
for
109119442
sly-u.5
for
101259073
osa-u.5
for
4332779
zma-u.5
for
100193430


Ortholog ID: 8407
Species gma gma mtr mtr ppo ath bra vvi ghi ghi bna bna cit sly sly sot nta nta osa zma tae tae hvu sbi bdi cre cre
Symbol LOC100791132 LOC100776123 LOC11416983 LOC11410109 LOC7497427 AT2G30320 LOC103857306 LOC100241658 LOC107935045 LOC107927029 LOC106387879 LOC106437596 LOC102625111 LOC101259073 LOC109119442 LOC102594663 LOC107810419 LOC142166197 LOC4332779 LOC100193430 LOC123097529 LOC123085811 LOC123448681 LOC8083658 LOC100837227 CHLRE_16g691900v5 CHLRE_03g152950v5
Function* putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase Pseudouridine synthase family protein putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase Putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00240 Pyrimidine metabolism 3
mtr01240 Biosynthesis of cofactors 3
mtr01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04626 Plant-pathogen interaction 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 4
tae00620 Pyruvate metabolism 4
tae01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 2
tae00620 Pyruvate metabolism 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 3
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100791132 100776123 11416983 11410109 7497427 817582 103857306 100241658 107935045 107927029 106387879 106437596 102625111 101259073 109119442 102594663 107810419 142166197 4332779 100193430 123097529 123085811 123448681 8083658 100837227 66056819 5723113
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