ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100777317	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
gma-r.7	100777317	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
gma-u.5	100790033	3-hydroxy-3-methylglutaryl-coenzyme A reductase
gma-u.5	100784330	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
gma-u.5	100786956	3-hydroxy-3-methylglutaryl coenzyme A reductase 1
mtr-u.5	11441531	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
mtr-u.5	120580466	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like
mtr-u.5	120580464	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like
ppo-u.5	7480368	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
ppo-u.5	18098173	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
ath-u.5	HMG2	3-hydroxy-3-methylglutaryl-CoA reductase 2
ath-u.5	HMG1	hydroxy methylglutaryl CoA reductase 1
bra-r.6	103853029	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
bra-r.6	103845964	3-hydroxy-3-methylglutaryl-coenzyme A reductase 2
bra-r.6	103832111	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
vvi-u.5	100265082	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
vvi-u.5	100245191	3-hydroxy-3-methylglutaryl-coenzyme A reductase
vvi-u.5	100243051	3-hydroxy-3-methylglutaryl coenzyme A reductase 2-A
ghi-r.1	107949229	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like
ghi-r.1	107908971	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like
ghi-r.1	107908972	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like
bna-r.1	111206800	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
bna-r.1	106381415	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like
bna-r.1	106393352	3-hydroxy-3-methylglutaryl-coenzyme A reductase 2-like
cit-r.1	102609952	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
cit-r.1	102629783	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like
sly-u.5	HMG2	3-hydroxy-3-methylglutaryl-coenzyme A reductase 2
sly-u.5	HMG3	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3
sly-u.5	HMGR	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
sot-r.1	102577467	HMG-CoA reductase
sot-r.1	HMGR	hydroxymethylglutaryl coenzyme A reductase
sot-r.1	102577889	HMG-CoA reductase
nta-r.1	107772124	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
nta-r.1	107777769	3-hydroxy-3-methylglutaryl-coenzyme A reductase-like
nta-r.1	107832729	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like
osa-u.5	4346017	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like
osa-u.5	4347443	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like
zma-u.5	100191922	3-hydroxy-3-methylglutaryl-coenzyme A reductase 2
tae-r.2	123112452	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3
tae-r.2	123121961	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3
tae-r.2	123151295	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3
hvu-r.1	123399477	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like
hvu-r.1	123408561	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3
sbi-r.1	8057903	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3
sbi-r.1	8054742	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3
bdi-r.1	100828238	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3
bdi-r.1	100840327	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3

Top 50 coexpressed genes to 100777317 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100777317 (gma-u.5 coexpression data)

CoexMap"100777317"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx00900 [list] [network] Terpenoid backbone biosynthesis (91 genes)

GO BP

GO:0015936 [list] [network] coenzyme A metabolic process	(38 genes)	IEA
GO:0016126 [list] [network] sterol biosynthetic process	(39 genes)	IEA
GO:0008299 [list] [network] isoprenoid biosynthetic process	(162 genes)	IEA

GO CC

GO:0005778 [list] [network] peroxisomal membrane	(48 genes)	IEA
GO:0005789 [list] [network] endoplasmic reticulum membrane	(411 genes)	IEA

GO MF

GO:0004420 [list] [network] hydroxymethylglutaryl-CoA reductase (NADPH) activity	(8 genes)	IEA
GO:0005515 [list] [network] protein binding	(7243 genes)	IEA

Protein

XP_003545556.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, E.R. 3, chlo 1, cyto 1, vacu 1, cysk 1

(predict for XP_003545556.1)

Subcellular
localization
TargetP

other 9

(predict for XP_003545556.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100777317	gma-r.7 for 100777317	gma-u.5 for 100790033	gma-u.5 for 100784330	gma-u.5 for 100786956	mtr-u.5 for 11441531	mtr-u.5 for 120580466	mtr-u.5 for 120580464	ppo-u.5 for 7480368	ppo-u.5 for 18098173	ath-u.5 for HMG2	ath-u.5 for HMG1	bra-r.6 for 103853029	bra-r.6 for 103845964	bra-r.6 for 103832111	vvi-u.5 for 100265082	vvi-u.5 for 100245191	vvi-u.5 for 100243051	ghi-r.1 for 107949229	ghi-r.1 for 107908971	ghi-r.1 for 107908972	bna-r.1 for 111206800	bna-r.1 for 106381415	bna-r.1 for 106393352	cit-r.1 for 102609952	cit-r.1 for 102629783	sly-u.5 for HMG2	sly-u.5 for HMG3	sly-u.5 for HMGR	sot-r.1 for 102577467	sot-r.1 for HMGR	sot-r.1 for 102577889	nta-r.1 for 107772124	nta-r.1 for 107777769	nta-r.1 for 107832729	osa-u.5 for 4346017	osa-u.5 for 4347443	zma-u.5 for 100191922	tae-r.2 for 123112452	tae-r.2 for 123121961	tae-r.2 for 123151295	hvu-r.1 for 123399477	hvu-r.1 for 123408561	sbi-r.1 for 8057903	sbi-r.1 for 8054742	bdi-r.1 for 100828238	bdi-r.1 for 100840327

Ortholog

Ortholog ID: 1254

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

HMG2

HMG1

HMG2

HMG3

HMGR4

Function^*

3-hydroxy-3-methylglutaryl-coenzyme A reductase 1

3-hydroxy-3-methylglutaryl-coenzyme A reductase

3-hydroxy-3-methylglutaryl coenzyme A reductase 1

3-hydroxy-3-methylglutaryl-coenzyme A reductase 1

3-hydroxy-3-methylglutaryl-CoA reductase 2

hydroxy methylglutaryl CoA reductase 1

3-hydroxy-3-methylglutaryl-coenzyme A reductase 1

3-hydroxy-3-methylglutaryl-coenzyme A reductase 2

3-hydroxy-3-methylglutaryl-coenzyme A reductase 1

3-hydroxy-3-methylglutaryl-coenzyme A reductase

3-hydroxy-3-methylglutaryl coenzyme A reductase 2-A

3-hydroxy-3-methylglutaryl-coenzyme A reductase 1

3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like

3-hydroxy-3-methylglutaryl-coenzyme A reductase 2-like

3-hydroxy-3-methylglutaryl-coenzyme A reductase 2

3-hydroxy-3-methylglutaryl-coenzyme A reductase 1

3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like

3-hydroxy-3-methylglutaryl-coenzyme A reductase 2

3-hydroxy-3-methylglutaryl-coenzyme A reductase 3

3-hydroxy-3-methylglutaryl-coenzyme A reductase 4

HMG-CoA reductase

3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like

3-hydroxy-3-methylglutaryl-coenzyme A reductase 1

3-hydroxy-3-methylglutaryl-coenzyme A reductase-like

3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like

3-hydroxy-3-methylglutaryl-coenzyme A reductase 2

3-hydroxy-3-methylglutaryl-coenzyme A reductase 3

3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like

3-hydroxy-3-methylglutaryl-coenzyme A reductase 3

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00052	Galactose metabolism	6
gma00520	Amino sugar and nucleotide sugar metabolism	6
gma01250	Biosynthesis of nucleotide sugars	6
gma00010	Glycolysis / Gluconeogenesis	4
gma00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	6
gma00280	Valine, leucine and isoleucine degradation	2
gma00650	Butanoate metabolism	2
gma00999	Biosynthesis of various plant secondary metabolites	2
gma00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	12
gma00280	Valine, leucine and isoleucine degradation	3
gma00650	Butanoate metabolism	3
gma00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	9
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	9
mtr04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	4
vvi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04145	Phagosome	3
vvi04517	IgSF CAM signaling	2
vvi04814	Motor proteins	2
vvi00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	4
bna00061	Fatty acid biosynthesis	2
bna01040	Biosynthesis of unsaturated fatty acids	2
bna01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04382	Cornified envelope formation	4
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04382	Cornified envelope formation	4
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00900	Terpenoid backbone biosynthesis	2
cit00630	Glyoxylate and dicarboxylate metabolism	2
cit01200	Carbon metabolism	2
cit01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00900	Terpenoid backbone biosynthesis	6
sly04120	Ubiquitin mediated proteolysis	2
sly00280	Valine, leucine and isoleucine degradation	2
sly00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00900	Terpenoid backbone biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00900	Terpenoid backbone biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	10
sot00280	Valine, leucine and isoleucine degradation	3
sot00650	Butanoate metabolism	3
sot00020	Citrate cycle (TCA cycle)	3
sot00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	12
sot00280	Valine, leucine and isoleucine degradation	4
sot00650	Butanoate metabolism	4
sot01200	Carbon metabolism	4
sot00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00020	Citrate cycle (TCA cycle)	6
nta00010	Glycolysis / Gluconeogenesis	3
nta01200	Carbon metabolism	3
nta01230	Biosynthesis of amino acids	3
nta03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01250	Biosynthesis of nucleotide sugars	5
nta00520	Amino sugar and nucleotide sugar metabolism	3
nta00541	Biosynthesis of various nucleotide sugars	2
nta04145	Phagosome	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	9
nta00020	Citrate cycle (TCA cycle)	6
nta00071	Fatty acid degradation	3
nta00280	Valine, leucine and isoleucine degradation	3
nta00310	Lysine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00062	Fatty acid elongation	3
tae04626	Plant-pathogen interaction	3
tae00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00062	Fatty acid elongation	3
tae04626	Plant-pathogen interaction	3
tae00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	3
tae00073	Cutin, suberine and wax biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	4
hvu00290	Valine, leucine and isoleucine biosynthesis	2
hvu00770	Pantothenate and CoA biosynthesis	2
hvu01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	6
sbi01230	Biosynthesis of amino acids	4
sbi00010	Glycolysis / Gluconeogenesis	3
sbi00051	Fructose and mannose metabolism	3
sbi00710	Carbon fixation by Calvin cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2
bdi04626	Plant-pathogen interaction	2
bdi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00900	Terpenoid backbone biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

100777317

100790033

100786956

11407896

11415590

11416581

7480368

7494728

816244

843982

103853029

103845964

103832111

100265082

100245191

100243051

107928879

107900974

107898896

106381415

106393352

106447170

102609952

102629783

101265292

101266490

101266800

102577467

102585007

102599791

107832729

107759218

142179436

4346017

4347443

100191922

123112452

123121961

123165516

123399477

123408561

8057903

8054742

100828238

100840327

The preparation time of this page was 1.7 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	2	2	3	3	3	3	2	3	3	3	2	1	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100777317 (gma-u.5 coexpression data)

Top 50 enrichment test to 100777317 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**