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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100777676   coleoptile phototropism protein 1 
 gma-r.7   100777676   coleoptile phototropism protein 1 
 gma-m.5   100777676   coleoptile phototropism protein 1 
 gma-u.5   100777820   root phototropism protein 3-like 
 mtr-u.5   25491354   root phototropism protein 3 
 mtr-u.5   11433561   root phototropism protein 3 
 ppo-u.5   7478376   root phototropism protein 3 
 ppo-u.5   18094739   root phototropism protein 3 
 ath-u.5   AT3G15570   Phototropic-responsive NPH3 family protein 
 ath-u.5   AT1G52770   Phototropic-responsive NPH3 family protein 
 bra-r.6   103871188   root phototropism protein 3 
 bra-r.6   103859628   coleoptile phototropism protein 1 
 bra-r.6   103869901   coleoptile phototropism protein 1 
 vvi-u.5   100246371   coleoptile phototropism protein 1 
 ghi-r.1   107913920   root phototropism protein 3 
 ghi-r.1   107897223   root phototropism protein 3 
 bna-r.1   125610075   root phototropism protein 3-like 
 bna-r.1   106439414   coleoptile phototropism protein 1-like 
 cit-r.1   102622897   coleoptile phototropism protein 1 
 sly-u.5   101254886   root phototropism protein 3-like 
 sot-r.1   102584568   root phototropism protein 3-like 
 nta-r.1   107783434   root phototropism protein 3 
 nta-r.1   107792920   root phototropism protein 3 
 osa-u.5   4326222   coleoptile phototropism protein 1-like 
 zma-u.5   103649677   coleoptile phototropism protein 1 
 hvu-r.1   123426832   coleoptile phototropism protein 1-like 
 sbi-r.1   8078793   coleoptile phototropism protein 1 
 bdi-r.1   100828281   coleoptile phototropism protein 1 
 bdi-r.1   100821090   root phototropism protein 3 

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Top 50 coexpressed genes to 100777676 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100777676 (gma-u.5 coexpression data)

CoexMap"100777676"


gmaLOC100777676 | Entrez gene ID : 100777676      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma hvu sbi bdi cre tae
Paralog 4 2 2 2 3 1 2 2 1 1 1 2 1 1 1 1 2 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_003531695.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  cyto 1  (predict for XP_003531695.1)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for XP_003531695.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100777676
gma-r.7
for
100777676
gma-m.5
for
100777676
gma-u.5
for
100777820
mtr-u.5
for
25491354
mtr-u.5
for
11433561
ppo-u.5
for
7478376
ppo-u.5
for
18094739
ath-u.5
for
AT3G15570
ath-u.5
for
AT1G52770
bra-r.6
for
103871188
bra-r.6
for
103859628
bra-r.6
for
103869901
vvi-u.5
for
100246371
ghi-r.1
for
107913920
ghi-r.1
for
107897223
bna-r.1
for
125610075
bna-r.1
for
106439414
cit-r.1
for
102622897
sly-u.5
for
101254886
sot-r.1
for
102584568
nta-r.1
for
107783434
nta-r.1
for
107792920
osa-u.5
for
4326222
zma-u.5
for
103649677
hvu-r.1
for
123426832
sbi-r.1
for
8078793
bdi-r.1
for
100828281
bdi-r.1
for
100821090


Ortholog ID: 4234
Species gma gma mtr mtr ppo ppo ath ath bra bra bra vvi ghi ghi bna bna bna cit sly sot nta nta osa zma hvu sbi bdi bdi
Symbol LOC100777676 LOC100777820 LOC25491354 LOC11433561 LOC7478376 LOC18094739 AT3G15570 AT1G52770 LOC103871188 LOC103859628 LOC103869901 LOC100246371 LOC107913920 LOC107897223 LOC125610075 LOC106401107 LOC106405982 LOC102622897 LOC101254886 LOC102584568 LOC107783434 LOC107792920 LOC4326222 LOC103649677 LOC123426832 LOC8078793 LOC100828281 LOC100821090
Function* coleoptile phototropism protein 1 root phototropism protein 3-like root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 Phototropic-responsive NPH3 family protein Phototropic-responsive NPH3 family protein root phototropism protein 3 coleoptile phototropism protein 1 coleoptile phototropism protein 1 coleoptile phototropism protein 1 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3-like coleoptile phototropism protein 1 coleoptile phototropism protein 1 coleoptile phototropism protein 1 root phototropism protein 3-like root phototropism protein 3-like root phototropism protein 3 root phototropism protein 3 coleoptile phototropism protein 1-like coleoptile phototropism protein 1 coleoptile phototropism protein 1-like coleoptile phototropism protein 1 coleoptile phototropism protein 1 root phototropism protein 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 3
mtr00710 Carbon fixation by Calvin cycle 2
mtr00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 2
mtr04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00730 Thiamine metabolism 4
bra01240 Biosynthesis of cofactors 4
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00062 Fatty acid elongation 2
bra01212 Fatty acid metabolism 2
bra04142 Lysosome 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
bra00062 Fatty acid elongation 2
bra01212 Fatty acid metabolism 2
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 7
vvi00710 Carbon fixation by Calvin cycle 5
vvi00630 Glyoxylate and dicarboxylate metabolism 3
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 8
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bna00270 Cysteine and methionine metabolism 3
bna00350 Tyrosine metabolism 3
bna00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 5
nta04075 Plant hormone signal transduction 4
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 4
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi00270 Cysteine and methionine metabolism 2
sbi00350 Tyrosine metabolism 2
sbi00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100777676 100777820 25491354 11433561 7478376 18094739 820797 841710 103871188 103859628 103869901 100246371 107913920 107897223 125610075 106401107 106405982 102622897 101254886 102584568 107783434 107792920 4326222 103649677 123426832 8078793 100828281 100821090
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