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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100778262   transcription elongation factor 1 homolog 
 gma-r.7   100778262   transcription elongation factor 1 homolog 
 gma-m.5   100778262   transcription elongation factor 1 homolog 
 gma-u.5   100781562   transcription elongation factor 1 homolog 
 mtr-u.5   25493060   transcription elongation factor 1 homolog 
 ppo-u.5   18110184   transcription elongation factor 1 homolog 
 ppo-u.5   7485139   transcription elongation factor 1 homolog 
 ath-u.5   AT5G46030   transcription elongation factor-like protein 
 vvi-u.5   100253769   transcription elongation factor 1 homolog 
 vvi-u.5   100246889   transcription elongation factor 1 homolog 
 sly-u.5   101252629   transcription elongation factor 1 homolog 
 sly-u.5   101268159   transcription elongation factor 1 homolog 
 osa-u.5   4328219   transcription elongation factor 1 homolog 
 osa-u.5   4343996   transcription elongation factor 1 homolog 
 zma-u.5   103639764   uncharacterized LOC103639764 

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Top 50 coexpressed genes to 100778262 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100778262 (gma-u.5 coexpression data)

CoexMap"100778262"


gmaLOC100778262 | Entrez gene ID : 100778262      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 2 1 2 2 2 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (35 genes)  IEA  
GO CC
GO:0008023 [list] [network] transcription elongation factor complex  (51 genes)  IEA  
GO MF
GO:0000993 [list] [network] RNA polymerase II complex binding  (35 genes)  IEA  
Protein XP_003535414.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  mito 2,  extr 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_003535414.1)
Subcellular
localization
TargetP
other 6  (predict for XP_003535414.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100778262

.
gma-r.7
for
100778262

.
gma-m.5
for
100778262

.
gma-u.5
for
100781562

.
mtr-u.5
for
25493060

.
ppo-u.5
for
18110184

.
ppo-u.5
for
7485139

.
ath-u.5
for
AT5G46030

.
vvi-u.5
for
100253769

.
vvi-u.5
for
100246889

.
sly-u.5
for
101252629

.
sly-u.5
for
101268159

.
osa-u.5
for
4328219

.
osa-u.5
for
4343996

.
zma-u.5
for
103639764

.


Ortholog ID: 1438
Species ath gma gma sly sly osa bra bra vvi vvi ppo ppo mtr tae ghi ghi bna bna cre sbi sot sot cit nta nta
Symbol AT5G46030 LOC100778262 LOC100781562 LOC101252629 LOC101268159 LOC4328219 LOC103827760 LOC103853681 LOC100253769 LOC100246889 LOC7485139 LOC18110184 LOC25493060 LOC123069449 LOC107941193 LOC107962965 LOC106436357 LOC106436373 CHLRE_17g702550v5 LOC8069161 LOC102585461 LOC102579579 LOC102628584 LOC107759182 LOC107794856
Function* transcription elongation factor-like protein transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog uncharacterized protein transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog transcription elongation factor 1 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 3
ath03420 Nucleotide excision repair 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly03040 Spliceosome 2
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
vvi03018 RNA degradation 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo04141 Protein processing in endoplasmic reticulum 3
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
mtr03083 Polycomb repressive complex 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 3
bna03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00770 Pantothenate and CoA biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03022 Basal transcription factors 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 5
sot03083 Polycomb repressive complex 4
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04136 Autophagy - other 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta04145 Phagosome 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 5
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834644 100778262 100781562 101252629 101268159 4328219 103827760 103853681 100253769 100246889 7485139 18110184 25493060 123069449 107941193 107962965 106436357 106436373 5717278 8069161 102585461 102579579 102628584 107759182 107794856
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