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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100780374   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 gma-r.7   100780374   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 gma-u.5   100792725   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 mtr-u.5   25493517   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 ppo-u.5   7489405   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 ppo-u.5   7479520   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 ath-u.5   GPS1   geranyl diphosphate synthase 1 
 vvi-u.5   100232946   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 sly-u.5   GPS   geranyl pyrophosphate synthase 
 osa-u.5   4341844   solanesyl-diphosphate synthase 1, mitochondrial-like 
 zma-u.5   103626280   solanesyl-diphosphate synthase 1, mitochondrial 
 zma-u.5   100279314   decaprenyl-diphosphate synthase subunit 1 

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Top 50 coexpressed genes to 100780374 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100780374 (gma-u.5 coexpression data)

CoexMap"100780374"


gmaLOC100780374 | Entrez gene ID : 100780374      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00900 [list] [network] Terpenoid backbone biosynthesis (91 genes)
GO BP
GO:0006744 [list] [network] ubiquinone biosynthetic process  (20 genes)  IEA  
GO:0008299 [list] [network] isoprenoid biosynthetic process  (162 genes)  IEA  
GO CC
GO:1990234 [list] [network] transferase complex  (968 genes)  IEA  
GO MF
GO:0004659 [list] [network] prenyltransferase activity  (67 genes)  IEA  
Protein XP_003550028.1 [sequence] [blastp]
XP_006600930.1 [sequence] [blastp]
XP_006600931.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 2,  plas 1,  E.R. 1,  E.R._plas 1  (predict for XP_003550028.1)
chlo 3,  mito 2,  plas 1,  E.R. 1,  E.R._plas 1  (predict for XP_006600930.1)
chlo 5,  plas 1,  nucl 1,  cyto 1,  mito 1,  vacu 1,  E.R. 1,  cyto_nucl 1,  golg_plas 1,  E.R._vacu 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_006600931.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_003550028.1)
other 6  (predict for XP_006600930.1)
other 4  (predict for XP_006600931.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100780374

.
gma-r.7
for
100780374

.
gma-u.5
for
100792725

.
mtr-u.5
for
25493517

.
ppo-u.5
for
7489405

.
ppo-u.5
for
7479520

.
ath-u.5
for
GPS1

.
vvi-u.5
for
100232946

.
sly-u.5
for
GPS

.
osa-u.5
for
4341844

.
zma-u.5
for
103626280

.
zma-u.5
for
100279314

.


Ortholog ID: 5963
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi bdi nta nta
Symbol GPS1 LOC100780374 LOC100792725 GPS LOC4341844 LOC100279314 LOC103626280 LOC103857539 LOC100232946 LOC7489405 LOC7479520 LOC25493517 LOC123149070 LOC123165008 LOC123410284 LOC107913810 LOC107953314 LOC106396189 LOC106447487 CHLRE_12g511700v5 LOC8061614 LOC102588989 LOC102624826 LOC102625110 LOC100832081 LOC100837237 LOC107776134 LOC107781844
Function* geranyl diphosphate synthase 1 solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial geranyl pyrophosphate synthase solanesyl-diphosphate synthase 1, mitochondrial-like decaprenyl-diphosphate synthase subunit 1 solanesyl-diphosphate synthase 1, mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like solanesyl diphosphate synthase 3, chloroplastic/mitochondrial uncharacterized protein solanesyl-diphosphate synthase 1, mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 2
gma00280 Valine, leucine and isoleucine degradation 2
gma01212 Fatty acid metabolism 2
gma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01232 Nucleotide metabolism 2
gma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 6
osa00020 Citrate cycle (TCA cycle) 5
osa01210 2-Oxocarboxylic acid metabolism 5
osa01230 Biosynthesis of amino acids 4
osa00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 3
vvi00280 Valine, leucine and isoleucine degradation 2
vvi00410 beta-Alanine metabolism 2
vvi00640 Propanoate metabolism 2
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
ppo00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00051 Fructose and mannose metabolism 2
sbi01240 Biosynthesis of cofactors 2
sbi01230 Biosynthesis of amino acids 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 3
sot04145 Phagosome 3
sot00520 Amino sugar and nucleotide sugar metabolism 3
sot01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi00620 Pyruvate metabolism 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818028 100780374 100792725 778311 4341844 100279314 103626280 103857539 100232946 7489405 7479520 25493517 123149070 123165008 123410284 107913810 107953314 106396189 106447487 5716593 8061614 102588989 102624826 102625110 100832081 100837237 107776134 107781844
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