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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100780600   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 gma-r.7   100780600   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 mtr-u.5   25488992   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 ppo-u.5   7487520   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 ath-u.5   EMB2729   Alpha amylase family protein 
 vvi-u.5   100260732   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 sly-u.5   101268012   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 osa-u.5   4341008   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 zma-u.5   100136878   starch branching enzyme III 

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Top 50 coexpressed genes to 100780600 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100780600 (gma-u.5 coexpression data)

CoexMap"100780600"


gmaLOC100780600 | Entrez gene ID : 100780600      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00500 [list] [network] Starch and sucrose metabolism (292 genes)
GO BP
GO:0005978 [list] [network] glycogen biosynthetic process  (17 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0003844 [list] [network] 1,4-alpha-glucan branching enzyme activity  (4 genes)  IEA  
GO:0004553 [list] [network] hydrolase activity, hydrolyzing O-glycosyl compounds  (691 genes)  IEA  
GO:0043169 [list] [network] cation binding  (3206 genes)  IEA  
Protein XP_003553060.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  pero 1,  cyto 1,  E.R. 1,  cysk_nucl 1,  nucl_plas 1,  cyto_E.R. 1  (predict for XP_003553060.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_003553060.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100780600

.
gma-r.7
for
100780600

.
mtr-u.5
for
25488992

.
ppo-u.5
for
7487520

.
ath-u.5
for
EMB2729

.
vvi-u.5
for
100260732

.
sly-u.5
for
101268012

.
osa-u.5
for
4341008

.
zma-u.5
for
100136878

.


Ortholog ID: 9497
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol EMB2729 LOC100780600 LOC101268012 LOC4341008 LOC100136878 LOC103869322 LOC100260732 LOC7487520 LOC25488992 LOC123162636 LOC123169852 LOC123410814 LOC107932778 LOC107903463 LOC125598519 LOC106432370 LOC8082518 LOC102603708 LOC102618514 LOC100826523 LOC107781906 LOC107794628
Function* Alpha amylase family protein 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic starch branching enzyme III 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03020 RNA polymerase 3
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 3
nta03460 Fanconi anemia pathway 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 3
nta03460 Fanconi anemia pathway 3
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821589 100780600 101268012 4341008 100136878 103869322 100260732 7487520 25488992 123162636 123169852 123410814 107932778 107903463 125598519 106432370 8082518 102603708 102618514 100826523 107781906 107794628
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