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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100782456   exosome complex exonuclease RRP44 homolog A 
 gma-r.7   100782456   exosome complex exonuclease RRP44 homolog A 
 gma-u.5   100806652   exosome complex exonuclease RRP44 homolog A 
 mtr-u.5   11424636   exosome complex exonuclease RRP44 homolog A 
 ppo-u.5   18101070   exosome complex exonuclease RRP44 homolog A 
 ath-u.5   EMB2763   ribonuclease II family protein 
 bra-r.6   103837810   exosome complex exonuclease RRP44 homolog A 
 vvi-u.5   100267912   exosome complex exonuclease RRP44 homolog A 
 ghi-r.1   107954781   exosome complex exonuclease RRP44 homolog A 
 ghi-r.1   107955297   exosome complex exonuclease RRP44 homolog A 
 bna-r.1   106366378   exosome complex exonuclease RRP44 homolog A 
 bna-r.1   106401403   exosome complex exonuclease RRP44 homolog A 
 cit-r.1   102613015   exosome complex exonuclease RRP44 homolog A 
 sly-u.5   101263664   exosome complex exonuclease RRP44 homolog A 
 nta-r.1   107829893   exosome complex exonuclease RRP44 homolog A 
 nta-r.1   107765045   exosome complex exonuclease RRP44 homolog A-like 
 osa-u.5   4331494   exosome complex exonuclease RRP44 homolog A 
 zma-u.5   100194408   uncharacterized LOC100194408 
 tae-r.2   123098847   exosome complex exonuclease RRP44 homolog A 
 tae-r.2   123105785   exosome complex exonuclease RRP44 homolog A 
 tae-r.2   123093577   exosome complex exonuclease RRP44 homolog A 
 hvu-r.1   123449790   exosome complex exonuclease RRP44 homolog A 
 sbi-r.1   8085691   exosome complex exonuclease RRP44 homolog A 
 bdi-r.1   100829846   exosome complex exonuclease RRP44 homolog A 
 cre-r.1   CHLRE_14g613850v5   uncharacterized protein 

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Top 50 coexpressed genes to 100782456 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100782456 (gma-u.5 coexpression data)

CoexMap"100782456"


gmaLOC100782456 | Entrez gene ID : 100782456      
Species gma mtr ppo ath bra vvi ghi bna cit sly nta osa zma tae hvu sbi bdi cre sot
Paralog 3 1 1 1 1 1 2 2 1 1 2 1 1 3 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03018 [list] [network] RNA degradation (191 genes)
GO BP
GO:0016075 [list] [network] rRNA catabolic process  (14 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (23 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (30 genes)  IEA  
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (50 genes)  IEA  
GO:0004519 [list] [network] endonuclease activity  (319 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
Protein XP_003526807.1 [sequence] [blastp]
XP_006581717.1 [sequence] [blastp]
XP_006581718.1 [sequence] [blastp]
XP_014631918.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 4,  chlo 1  (predict for XP_003526807.1)
cyto 4,  nucl 4,  chlo 1  (predict for XP_006581717.1)
cyto 4,  nucl 4,  chlo 1  (predict for XP_006581718.1)
chlo 5,  mito 3,  cyto 1,  cyto_mito 1,  mito_plas 1  (predict for XP_014631918.1)
Subcellular
localization
TargetP
other 7  (predict for XP_003526807.1)
other 7  (predict for XP_006581717.1)
other 7  (predict for XP_006581718.1)
mito 6  (predict for XP_014631918.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100782456
gma-r.7
for
100782456
gma-u.5
for
100806652
mtr-u.5
for
11424636
ppo-u.5
for
18101070
ath-u.5
for
EMB2763
bra-r.6
for
103837810
vvi-u.5
for
100267912
ghi-r.1
for
107954781
ghi-r.1
for
107955297
bna-r.1
for
106366378
bna-r.1
for
106401403
cit-r.1
for
102613015
sly-u.5
for
101263664
nta-r.1
for
107829893
nta-r.1
for
107765045
osa-u.5
for
4331494
zma-u.5
for
100194408
tae-r.2
for
123098847
tae-r.2
for
123105785
tae-r.2
for
123093577
hvu-r.1
for
123449790
sbi-r.1
for
8085691
bdi-r.1
for
100829846
cre-r.1
for
CHLRE_14g613850v5


Ortholog ID: 9983
Species gma gma mtr ppo ath bra vvi ghi ghi bna bna cit sly nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC100782456 LOC100806652 LOC11424636 LOC18101070 EMB2763 LOC103837810 LOC100267912 LOC107954781 LOC107955297 LOC106366378 LOC106401403 LOC102613015 LOC101263664 LOC107829893 LOC107765045 LOC4331494 LOC100194408 LOC123098847 LOC123105785 LOC123093577 LOC123449790 LOC8085691 LOC100829846 CHLRE_14g613850v5
Function* exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A ribonuclease II family protein exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A-like exosome complex exonuclease RRP44 homolog A uncharacterized LOC100194408 exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
gma03440 Homologous recombination 2
gma04120 Ubiquitin mediated proteolysis 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
gma00514 Other types of O-glycan biosynthesis 2
gma03440 Homologous recombination 2
gma03040 Spliceosome 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
bra03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 10
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03018 RNA degradation 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03013 Nucleocytoplasmic transport 2
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03015 mRNA surveillance pathway 4
tae03083 Polycomb repressive complex 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 3
tae03020 RNA polymerase 2
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03018 RNA degradation 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03030 DNA replication 3
hvu03440 Homologous recombination 3
hvu03420 Nucleotide excision repair 2
hvu03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03040 Spliceosome 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03018 RNA degradation 2
bdi03040 Spliceosome 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100782456 100806652 11424636 18101070 816257 103837810 100267912 107954781 107955297 106366378 106401403 102613015 101263664 107829893 107765045 4331494 100194408 123098847 123105785 123093577 123449790 8085691 100829846 66056185
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