ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100782719	DNA repair RAD52-like protein 1, mitochondrial
gma-r.7	100782719	DNA repair RAD52-like protein 1, mitochondrial
gma-m.5	100782719	DNA repair RAD52-like protein 1, mitochondrial
mtr-u.5	11421459	DNA repair RAD52-like protein 1, mitochondrial
ppo-u.5	18108409	DNA repair RAD52-like protein 1, mitochondrial
ath-u.5	RAD52-1	cobalt ion binding protein
bra-r.6	103830856	DNA repair RAD52-like protein 1, mitochondrial
vvi-u.5	100261996	DNA repair RAD52-like protein 1, mitochondrial
ghi-r.1	107910636	DNA repair RAD52-like protein 1, mitochondrial
ghi-r.1	107951102	DNA repair RAD52-like protein 1, mitochondrial
bna-r.1	BNACNNG17030D	DNA repair RAD52-like protein 1, mitochondrial
bna-r.1	106352261	DNA repair RAD52-like protein 1, mitochondrial
cit-r.1	102615229	DNA repair RAD52-like protein 1, mitochondrial
sly-u.5	101261638	DNA repair RAD52-like protein 1, mitochondrial
sot-r.1	102601709	uncharacterized LOC102601709
nta-r.1	107830657	DNA repair RAD52-like protein 1, mitochondrial
nta-r.1	107785332	DNA repair RAD52-like protein 1, mitochondrial
osa-u.5	4325084	DNA repair RAD52-like protein 1, mitochondrial
zma-u.5	100283612	uncharacterized LOC100283612
zma-u.5	100283480	snRK1-interacting protein 1
tae-r.2	123079958	DNA repair RAD52-like protein 1, mitochondrial
tae-r.2	123071615	DNA repair RAD52-like protein 1, mitochondrial
tae-r.2	123062795	DNA repair RAD52-like protein 1, mitochondrial
hvu-r.1	123440442	DNA repair RAD52-like protein 1, mitochondrial
sbi-r.1	110433921	DNA repair RAD52-like protein 1, mitochondrial
bdi-r.1	100842020	DNA repair RAD52-like protein 1, mitochondrial

Annotation

functional annotation

KEGG

GO BP

GO:0000724 [list] [network] double-strand break repair via homologous recombination

(164 genes)

IEA

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(3517 genes)

IEA

Protein

XP_014617841.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 5, chlo 4, nucl 1, cyto 1, cyto_nucl 1

(predict for XP_014617841.1)

Subcellular
localization
TargetP

mito 8

(predict for XP_014617841.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100782719	gma-r.7 for 100782719	gma-m.5 for 100782719	mtr-u.5 for 11421459	ppo-u.5 for 18108409	ath-u.5 for RAD52-1	bra-r.6 for 103830856	vvi-u.5 for 100261996	ghi-r.1 for 107910636	ghi-r.1 for 107951102	bna-r.1 for BNACNNG17030D	bna-r.1 for 106352261	cit-r.1 for 102615229	sly-u.5 for 101261638	sot-r.1 for 102601709	nta-r.1 for 107830657	nta-r.1 for 107785332	osa-u.5 for 4325084	zma-u.5 for 100283612	zma-u.5 for 100283480	tae-r.2 for 123079958	tae-r.2 for 123071615	tae-r.2 for 123062795	hvu-r.1 for 123440442	sbi-r.1 for 110433921	bdi-r.1 for 100842020

Ortholog

Ortholog ID: 11121

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

RAD52-1

Function^*

DNA repair RAD52-like protein 1, mitochondrial

cobalt ion binding protein

DNA repair RAD52-like protein 1, mitochondrial

uncharacterized LOC102601709

DNA repair RAD52-like protein 1, mitochondrial

uncharacterized LOC100283612

snRK1-interacting protein 1

DNA repair RAD52-like protein 1, mitochondrial

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	3
gma00010	Glycolysis / Gluconeogenesis	2
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	7
ghi00300	Lysine biosynthesis	2
ghi00470	D-Amino acid metabolism	2
ghi01230	Biosynthesis of amino acids	2
ghi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	7
ghi03015	mRNA surveillance pathway	2
ghi00300	Lysine biosynthesis	2
ghi00470	D-Amino acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00195	Photosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5
sly03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	4
nta04626	Plant-pathogen interaction	2
nta00030	Pentose phosphate pathway	2
nta01200	Carbon metabolism	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04626	Plant-pathogen interaction	4
nta00230	Purine metabolism	3
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3
zma03083	Polycomb repressive complex	2
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4
zma03013	Nucleocytoplasmic transport	3
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae00290	Valine, leucine and isoleucine biosynthesis	3
tae00770	Pantothenate and CoA biosynthesis	3
tae01210	2-Oxocarboxylic acid metabolism	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00230	Purine metabolism	3
tae01232	Nucleotide metabolism	3
tae00290	Valine, leucine and isoleucine biosynthesis	2
tae00770	Pantothenate and CoA biosynthesis	2
tae01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00290	Valine, leucine and isoleucine biosynthesis	3
tae00770	Pantothenate and CoA biosynthesis	3
tae01210	2-Oxocarboxylic acid metabolism	3
tae01230	Biosynthesis of amino acids	3
tae03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	2
bdi03010	Ribosome	2

Expression

Expression pattern

Entrez Gene ID^*

100782719

11421459

18108409

843472

103830856

100261996

107910636

107951102

106400637

106352261

102615229

101261638

102601709

107830657

107785332

4325084

100283612

100283480

123079958

123071615

123062795

123440442

110433921

100842020

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100782719 (gma-u.5 coexpression data)

Top 50 enrichment test to 100782719 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	1	1	1	1	2	2	1	1	1	2	1	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100782719 (gma-u.5 coexpression data)

Top 50 enrichment test to 100782719 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**