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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   AP1   MADS-box transcription factor 
 gma-u.5   100805348   truncated transcription factor CAULIFLOWER A 
 mtr-u.5   25488419   truncated transcription factor CAULIFLOWER A 
 ppo-u.5   7468138   truncated transcription factor CAULIFLOWER A 
 ath-u.5   AP1   K-box region and MADS-box transcription factor family protein 
 ath-u.5   AGL8   AGAMOUS-like 8 
 vvi-u.5   VFUL-L   FUL-like protein 
 vvi-u.5   100257072   truncated transcription factor CAULIFLOWER A 
 vvi-u.5   AP1   apetala1 
 sly-u.5   FUL2   transcription factor FRUITFULL 
 osa-u.5   4334140   MADS-box transcription factor 14-like 
 osa-u.5   4342214   MADS-box transcription factor 15-like 
 zma-u.5   542041   m4 protein 
 zma-u.5   542257   zea apetala homolog 1 
 zma-u.5   541765   MADS3 

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Top 50 coexpressed genes to AP1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AP1 (gma-u.5 coexpression data)

CoexMap"100783045"


gmaLOC100783045 | Entrez gene ID : 100783045      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 1 2 3 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (294 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (449 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (557 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (899 genes)  IEA  
Protein XP_003531957.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_003531957.1)
Subcellular
localization
TargetP
mito 7,  other 5  (predict for XP_003531957.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
AP1

.
gma-u.5
for
100805348

.
mtr-u.5
for
25488419

.
ppo-u.5
for
7468138

.
ath-u.5
for
AP1

.
ath-u.5
for
AGL8

.
vvi-u.5
for
VFUL-L

.
vvi-u.5
for
100257072

.
vvi-u.5
for
AP1

.
sly-u.5
for
FUL2

.
osa-u.5
for
4334140

.
osa-u.5
for
4342214

.
zma-u.5
for
542041

.
zma-u.5
for
542257

.
zma-u.5
for
541765

.


Ortholog ID: 1094
Species ath sly osa osa zma zma vvi vvi ppo ppo mtr tae tae bna sbi sbi sot sot cit cit bdi bdi
Symbol AGL8 FUL1 LOC4334140 LOC4342214 LOC542257 LOC541765 LOC100257072 AP1 LOC7484716 LOC7468138 LOC25488419 LOC780641 LOC543351 LOC106439964 LOC8054531 LOC8085925 FUL2 FUL1 AP1 LOC102612359 LOC100842079 LOC100845222
Function* AGAMOUS-like 8 agamous-like MADS-box protein AGL8 homolog MADS-box transcription factor 14-like MADS-box transcription factor 15-like zea apetala homolog 1 MADS3 truncated transcription factor CAULIFLOWER A apetala1 truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A MADS-box transcription factor 15 mads11 protein agamous-like MADS-box protein AGL8 homolog MADS-box transcription factor 15 MADS-box transcription factor 14 agamous-like MADS-box protein AGL8 homolog Agamous-like MADS-box protein AGL8 homolog APETALA1 truncated transcription factor CAULIFLOWER A MADS-box transcription factor 14-like MADS-box transcription factor 15-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00260 Glycine, serine and threonine metabolism 2
sot00350 Tyrosine metabolism 2
sot00360 Phenylalanine metabolism 2
sot00410 beta-Alanine metabolism 2
sot00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836212 543839 4334140 4342214 542257 541765 100257072 100232952 7484716 7468138 25488419 780641 543351 106439964 8054531 8085925 102583048 102577795 102578018 102612359 100842079 100845222
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