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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100784276   protein TSS 
 gma-r.7   100784276   protein TSS 
 gma-u.5   100801625   protein TSS 
 mtr-u.5   11433937   protein TSS 
 ppo-u.5   18096693   protein REDUCED CHLOROPLAST COVERAGE 3 
 ath-u.5   AT1G15290   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100254354   protein REDUCED CHLOROPLAST COVERAGE 3 
 sly-u.5   101261719   protein REDUCED CHLOROPLAST COVERAGE 3 
 osa-u.5   4337192   protein REDUCED CHLOROPLAST COVERAGE 3 
 zma-u.5   103645852   protein TSS 
 zma-u.5   103642120   protein TSS 

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Top 50 coexpressed genes to 100784276 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100784276 (gma-u.5 coexpression data)

CoexMap"100784276"


gmaLOC100784276 | Entrez gene ID : 100784276      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006996 [list] [network] organelle organization  (1634 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_006583118.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cysk 2,  cyto_nucl 2  (predict for XP_006583118.1)
Subcellular
localization
TargetP
other 8  (predict for XP_006583118.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100784276

.
gma-r.7
for
100784276

.
gma-u.5
for
100801625

.
mtr-u.5
for
11433937

.
ppo-u.5
for
18096693

.
ath-u.5
for
AT1G15290

.
vvi-u.5
for
100254354

.
sly-u.5
for
101261719

.
osa-u.5
for
4337192

.
zma-u.5
for
103645852

.
zma-u.5
for
103642120

.


Ortholog ID: 7035
Species ath gma gma sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT1G15290 LOC100801625 LOC100784276 LOC101261719 LOC4337192 LOC103642120 LOC103645852 LOC103872320 LOC100254354 LOC18096693 LOC11433937 LOC123190799 LOC123054946 LOC123428166 LOC107962950 LOC121218638 LOC106452142 LOC106346672 LOC8068477 LOC102600715 LOC112495972 LOC100830075 LOC107816753 LOC107786647
Function* Tetratricopeptide repeat (TPR)-like superfamily protein protein TSS protein TSS protein REDUCED CHLOROPLAST COVERAGE 3 protein REDUCED CHLOROPLAST COVERAGE 3 protein TSS protein TSS protein TSS protein REDUCED CHLOROPLAST COVERAGE 3 protein REDUCED CHLOROPLAST COVERAGE 3 protein TSS protein TSS protein TSS protein TSS-like protein TSS protein TSS protein REDUCED CHLOROPLAST COVERAGE 3 protein REDUCED CHLOROPLAST COVERAGE 3 protein TSS protein TSS protein REDUCED CHLOROPLAST COVERAGE 3-like protein TSS protein REDUCED CHLOROPLAST COVERAGE 3 protein REDUCED CHLOROPLAST COVERAGE 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 4
bra00270 Cysteine and methionine metabolism 3
bra00920 Sulfur metabolism 2
bra01200 Carbon metabolism 2
bra01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00900 Terpenoid backbone biosynthesis 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo03082 ATP-dependent chromatin remodeling 3
ppo04120 Ubiquitin mediated proteolysis 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 5
mtr00710 Carbon fixation by Calvin cycle 3
mtr01230 Biosynthesis of amino acids 2
mtr00260 Glycine, serine and threonine metabolism 2
mtr00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00630 Glyoxylate and dicarboxylate metabolism 2
hvu00620 Pyruvate metabolism 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 4
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
ghi00270 Cysteine and methionine metabolism 3
ghi00350 Tyrosine metabolism 3
ghi00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 4
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00052 Galactose metabolism 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 4
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 3
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838097 100801625 100784276 101261719 4337192 103642120 103645852 103872320 100254354 18096693 11433937 123190799 123054946 123428166 107962950 121218638 106452142 106346672 8068477 102600715 112495972 100830075 107816753 107786647
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