ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100784398	binding partner of ACD11 1
gma-r.7	100784398	binding partner of ACD11 1
gma-u.5	100809613	binding partner of ACD11 1
gma-u.5	100812665	uncharacterized LOC100812665
gma-u.5	100819891	binding partner of ACD11 1
mtr-u.5	11409624	binding partner of ACD11 1
mtr-u.5	11423695	binding partner of ACD11 1
mtr-u.5	25482576	binding partner of ACD11 1
ppo-u.5	7476821	binding partner of ACD11 1
ppo-u.5	7491876	binding partner of ACD11 1
ath-u.5	AT4G17720	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G46870	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT1G67950	RNA-binding (RRM/RBD/RNP motifs) family protein
vvi-u.5	100262521	binding partner of ACD11 1
vvi-u.5	100252458	binding partner of ACD11 1
vvi-u.5	100244246	binding partner of ACD11 1
sly-u.5	101245856	binding partner of ACD11 1-like
sly-u.5	101259417	binding partner of ACD11 1
sly-u.5	101261352	binding partner of ACD11 1
osa-u.5	4336842	binding partner of ACD11 1
osa-u.5	4339900	binding partner of ACD11 1
zma-u.5	100274464	uncharacterized LOC100274464
zma-u.5	100282771	nucleic acid binding protein
zma-u.5	100283415	uncharacterized LOC100283415

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(2019 genes)

IEA

Protein

XP_040863258.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, E.R. 4, vacu 1, mito 1, extr 1

(predict for XP_040863258.1)

Subcellular
localization
TargetP

other 8

(predict for XP_040863258.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100784398	gma-r.7 for 100784398	gma-u.5 for 100809613	gma-u.5 for 100812665	gma-u.5 for 100819891	mtr-u.5 for 11409624	mtr-u.5 for 11423695	mtr-u.5 for 25482576	ppo-u.5 for 7476821	ppo-u.5 for 7491876	ath-u.5 for AT4G17720	ath-u.5 for AT5G46870	ath-u.5 for AT1G67950	vvi-u.5 for 100262521	vvi-u.5 for 100252458	vvi-u.5 for 100244246	sly-u.5 for 101245856	sly-u.5 for 101259417	sly-u.5 for 101261352	osa-u.5 for 4336842	osa-u.5 for 4339900	zma-u.5 for 100274464	zma-u.5 for 100282771	zma-u.5 for 100283415

Ortholog

Ortholog ID: 1128

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

binding partner of ACD11 1

RNA-binding (RRM/RBD/RNP motifs) family protein

binding partner of ACD11 1

binding partner of ACD11 1-like

binding partner of ACD11 1

binding partner of ACD11 1-like

binding partner of ACD11 1

binding partner of ACD11 1-like

binding partner of ACD11 1

putative RNA recognition motif containing family protein

binding partner of ACD11 1

binding partner of ACD11 1-like

binding partner of ACD11 1

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
gma00350	Tyrosine metabolism	2
gma00360	Phenylalanine metabolism	2
gma00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	4
gma03015	mRNA surveillance pathway	2
gma03013	Nucleocytoplasmic transport	2
gma04141	Protein processing in endoplasmic reticulum	2
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	12
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04814	Motor proteins	4
mtr01250	Biosynthesis of nucleotide sugars	3
mtr00541	Biosynthesis of various nucleotide sugars	2
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	4
ppo03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04145	Phagosome	4
ath04144	Endocytosis	3
ath03060	Protein export	3
ath04141	Protein processing in endoplasmic reticulum	3
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	4
ghi04145	Phagosome	4
ghi04130	SNARE interactions in vesicular transport	2
ghi03272	Virion - Hepatitis viruses	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01250	Biosynthesis of nucleotide sugars	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00053	Ascorbate and aldarate metabolism	2
sot01240	Biosynthesis of cofactors	2
sot04814	Motor proteins	2
sot00510	N-Glycan biosynthesis	2
sot00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	4
nta00051	Fructose and mannose metabolism	2
nta00230	Purine metabolism	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00040	Pentose and glucuronate interconversions	3
osa00053	Ascorbate and aldarate metabolism	3
osa00520	Amino sugar and nucleotide sugar metabolism	3
osa00541	Biosynthesis of various nucleotide sugars	3
osa01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00010	Glycolysis / Gluconeogenesis	2
zma01200	Carbon metabolism	2
zma01230	Biosynthesis of amino acids	2
zma04141	Protein processing in endoplasmic reticulum	2
zma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	3
tae00510	N-Glycan biosynthesis	2
tae00513	Various types of N-glycan biosynthesis	2
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	9
tae04016	MAPK signaling pathway - plant	3
tae04070	Phosphatidylinositol signaling system	3
tae04075	Plant hormone signal transduction	3
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04145	Phagosome	3
hvu00190	Oxidative phosphorylation	2
hvu04142	Lysosome	2
hvu00230	Purine metabolism	2
hvu01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00020	Citrate cycle (TCA cycle)	2
sbi01200	Carbon metabolism	2
sbi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	4
bdi04141	Protein processing in endoplasmic reticulum	3
bdi00510	N-Glycan biosynthesis	2
bdi00513	Various types of N-glycan biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

100784398

100797009

11430978

25482576

7491876

827493

843123

103831217

100244246

100252458

107946765

106406414

106440224

102629657

101261352

101259417

102581105

102601596

107804205

107810139

4333902

100193283

103642898

123088422

123190343

123427899

123408843

8067912

8063378

100836920

100840041

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100784398 (gma-u.5 coexpression data)

Top 50 enrichment test to 100784398 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	3	2	3	3	3	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100784398 (gma-u.5 coexpression data)

Top 50 enrichment test to 100784398 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**