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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100784731   diaminopimelate epimerase, chloroplastic 
 gma-r.7   100784731   diaminopimelate epimerase, chloroplastic 
 gma-u.5   100807528   diaminopimelate epimerase, chloroplastic-like 
 mtr-u.5   25499307   diaminopimelate epimerase, chloroplastic 
 mtr-u.5   11433124   diaminopimelate epimerase, chloroplastic 
 ppo-u.5   7487330   diaminopimelate epimerase, chloroplastic 
 ppo-u.5   7460375   diaminopimelate epimerase, chloroplastic 
 ath-u.5   AT3G53580   diaminopimelate epimerase family protein 
 bra-r.6   103841284   diaminopimelate epimerase, chloroplastic 
 bra-r.6   103867199   diaminopimelate epimerase, chloroplastic 
 bra-r.6   103829942   diaminopimelate epimerase, chloroplastic 
 vvi-u.5   100241380   diaminopimelate epimerase, chloroplastic 
 ghi-r.1   107948874   diaminopimelate epimerase, chloroplastic 
 ghi-r.1   107899279   diaminopimelate epimerase, chloroplastic 
 bna-r.1   106352839   diaminopimelate epimerase, chloroplastic-like 
 bna-r.1   106451032   diaminopimelate epimerase, chloroplastic-like 
 bna-r.1   106366141   diaminopimelate epimerase, chloroplastic 
 cit-r.1   102618536   diaminopimelate epimerase, chloroplastic 
 sly-u.5   101246955   diaminopimelate epimerase, chloroplastic 
 sot-r.1   102588220   diaminopimelate epimerase, chloroplastic 
 nta-r.1   107796792   diaminopimelate epimerase, chloroplastic-like 
 nta-r.1   107779873   diaminopimelate epimerase, chloroplastic-like 
 nta-r.1   107772556   diaminopimelate epimerase, chloroplastic 
 osa-u.5   4352558   diaminopimelate epimerase, chloroplastic-like 
 zma-u.5   100191234   Diaminopimelate epimerase chloroplastic 
 zma-u.5   100273435   Diaminopimelate epimerase chloroplastic 
 tae-r.2   123119712   diaminopimelate epimerase, chloroplastic 
 tae-r.2   123110705   diaminopimelate epimerase, chloroplastic-like 
 tae-r.2   123102524   diaminopimelate epimerase, chloroplastic 
 hvu-r.1   123398613   diaminopimelate epimerase, chloroplastic 
 sbi-r.1   110429778   diaminopimelate epimerase, chloroplastic-like 
 sbi-r.1   8068862   diaminopimelate epimerase, chloroplastic 
 bdi-r.1   100842496   diaminopimelate epimerase, chloroplastic 
 cre-r.1   CHLRE_05g237400v5   uncharacterized protein 

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Top 50 coexpressed genes to 100784731 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100784731 (gma-u.5 coexpression data)

CoexMap"100784731"


gmaLOC100784731 | Entrez gene ID : 100784731      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 2 1 3 1 2 3 1 1 1 3 1 2 3 1 2 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00300 [list] [network] Lysine biosynthesis (21 genes)
gmx00470 [list] [network] D-Amino acid metabolism (8 genes)
gmx01230 [list] [network] Biosynthesis of amino acids (403 genes)
GO BP
GO:0009089 [list] [network] lysine biosynthetic process via diaminopimelate  (20 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (1702 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0008837 [list] [network] diaminopimelate epimerase activity  (2 genes)  IEA  
Protein XP_003554333.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 4,  vacu 1  (predict for XP_003554333.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_003554333.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100784731
gma-r.7
for
100784731
gma-u.5
for
100807528
mtr-u.5
for
25499307
mtr-u.5
for
11433124
ppo-u.5
for
7487330
ppo-u.5
for
7460375
ath-u.5
for
AT3G53580
bra-r.6
for
103841284
bra-r.6
for
103867199
bra-r.6
for
103829942
vvi-u.5
for
100241380
ghi-r.1
for
107948874
ghi-r.1
for
107899279
bna-r.1
for
106352839
bna-r.1
for
106451032
bna-r.1
for
106366141
cit-r.1
for
102618536
sly-u.5
for
101246955
sot-r.1
for
102588220
nta-r.1
for
107796792
nta-r.1
for
107779873
nta-r.1
for
107772556
osa-u.5
for
4352558
zma-u.5
for
100191234
zma-u.5
for
100273435
tae-r.2
for
123119712
tae-r.2
for
123110705
tae-r.2
for
123102524
hvu-r.1
for
123398613
sbi-r.1
for
110429778
sbi-r.1
for
8068862
bdi-r.1
for
100842496
cre-r.1
for
CHLRE_05g237400v5


Ortholog ID: 5532
Species gma gma mtr mtr ppo ppo ath bra bra bra vvi ghi ghi bna bna bna cit sly sot nta nta nta osa zma zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC100784731 LOC100807528 LOC25499307 LOC11433124 LOC7487330 LOC7460375 AT3G53580 LOC103841284 LOC103867199 LOC103829942 LOC100241380 LOC107948874 LOC107899279 LOC106451032 LOC106406526 LOC106390801 LOC102618536 LOC101246955 LOC102588220 LOC107796792 LOC107779873 LOC107805769 LOC4352558 LOC100191234 LOC100273435 LOC123119712 LOC123110705 LOC123102524 LOC123398613 LOC110429778 LOC8068862 LOC100842496 CHLRE_05g237400v5
Function* diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase family protein diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic-like Diaminopimelate epimerase chloroplastic Diaminopimelate epimerase chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma03082 ATP-dependent chromatin remodeling 2
gma00020 Citrate cycle (TCA cycle) 2
gma00190 Oxidative phosphorylation 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma00190 Oxidative phosphorylation 3
gma00020 Citrate cycle (TCA cycle) 2
gma01200 Carbon metabolism 2
gma00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00010 Glycolysis / Gluconeogenesis 4
mtr00620 Pyruvate metabolism 4
mtr01200 Carbon metabolism 4
mtr00020 Citrate cycle (TCA cycle) 3
mtr00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr00300 Lysine biosynthesis 2
mtr00470 D-Amino acid metabolism 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo00590 Arachidonic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 12
ath00300 Lysine biosynthesis 5
ath01240 Biosynthesis of cofactors 4
ath01210 2-Oxocarboxylic acid metabolism 4
ath00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00300 Lysine biosynthesis 3
bra01230 Biosynthesis of amino acids 3
bra00480 Glutathione metabolism 2
bra00260 Glycine, serine and threonine metabolism 2
bra00261 Monobactam biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 4
vvi03018 RNA degradation 3
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi00300 Lysine biosynthesis 2
ghi00470 D-Amino acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi00300 Lysine biosynthesis 2
ghi00470 D-Amino acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00300 Lysine biosynthesis 2
bna00470 D-Amino acid metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 9
bna00300 Lysine biosynthesis 7
bna00470 D-Amino acid metabolism 3
bna00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00300 Lysine biosynthesis 2
bna00470 D-Amino acid metabolism 2
bna01230 Biosynthesis of amino acids 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 11
sly01210 2-Oxocarboxylic acid metabolism 4
sly00300 Lysine biosynthesis 4
sly00260 Glycine, serine and threonine metabolism 3
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 5
sot00300 Lysine biosynthesis 4
sot00061 Fatty acid biosynthesis 4
sot00620 Pyruvate metabolism 4
sot01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 6
nta00300 Lysine biosynthesis 5
nta00470 D-Amino acid metabolism 5
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 7
nta00300 Lysine biosynthesis 5
nta00470 D-Amino acid metabolism 5
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 8
nta00300 Lysine biosynthesis 5
nta00470 D-Amino acid metabolism 5
nta00270 Cysteine and methionine metabolism 3
nta00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 7
osa00300 Lysine biosynthesis 5
osa00470 D-Amino acid metabolism 3
osa01240 Biosynthesis of cofactors 3
osa00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 5
zma03010 Ribosome 3
zma00300 Lysine biosynthesis 2
zma00470 D-Amino acid metabolism 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 6
zma00300 Lysine biosynthesis 2
zma00470 D-Amino acid metabolism 2
zma04141 Protein processing in endoplasmic reticulum 2
zma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 9
tae03010 Ribosome 5
tae00340 Histidine metabolism 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00300 Lysine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 9
tae00340 Histidine metabolism 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00300 Lysine biosynthesis 3
tae00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 10
tae00250 Alanine, aspartate and glutamate metabolism 4
tae00340 Histidine metabolism 3
tae00300 Lysine biosynthesis 3
tae00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 4
hvu01200 Carbon metabolism 3
hvu01240 Biosynthesis of cofactors 3
hvu00030 Pentose phosphate pathway 2
hvu00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 5
sbi00300 Lysine biosynthesis 4
sbi00470 D-Amino acid metabolism 3
sbi01240 Biosynthesis of cofactors 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00300 Lysine biosynthesis 4
sbi01230 Biosynthesis of amino acids 4
sbi00470 D-Amino acid metabolism 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 6
bdi00300 Lysine biosynthesis 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100784731 100807528 25499307 11433124 7487330 7460375 824526 103841284 103867199 103829942 100241380 107948874 107899279 106451032 106406526 106390801 102618536 101246955 102588220 107796792 107779873 107805769 4352558 100191234 100273435 123119712 123110705 123102524 123398613 110429778 8068862 100842496 5723295
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