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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100785713   general transcription and DNA repair factor IIH subunit TFB5 
 gma-r.7   100785713   general transcription and DNA repair factor IIH subunit TFB5 
 gma-m.5   100785713   general transcription and DNA repair factor IIH subunit TFB5 
 mtr-u.5   11406059   general transcription and DNA repair factor IIH subunit TFB5 
 mtr-u.5   11411289   general transcription and DNA repair factor IIH subunit TFB5 
 ppo-u.5   18094417   general transcription and DNA repair factor IIH subunit TFB5 
 ath-u.5   AT1G12400   Nucleotide excision repair, TFIIH, subunit TTDA 
 osa-u.5   4338052   general transcription and DNA repair factor IIH subunit TFB5 
 osa-u.5   4343686   general transcription and DNA repair factor IIH subunit TFB5 
 zma-u.5   100281631   REX1 DNA Repair family protein 

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Top 50 coexpressed genes to 100785713 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100785713 (gma-u.5 coexpression data)

CoexMap"100785713"


gmaLOC100785713 | Entrez gene ID : 100785713      
Species gma mtr ppo ath osa zma tae hvu ghi bdi cit vvi bra cre sbi bna sly nta sot
Paralog 3 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03022 [list] [network] Basal transcription factors (90 genes)
gmx03420 [list] [network] Nucleotide excision repair (129 genes)
GO BP
GO:0006294 [list] [network] nucleotide-excision repair, preincision complex assembly  (2 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (62 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (130 genes)  IEA  
GO:0006366 [list] [network] transcription by RNA polymerase II  (130 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (11 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (22 genes)  IEA  
GO MF
Protein XP_006584882.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 1  (predict for XP_006584882.1)
Subcellular
localization
TargetP
scret 6,  other 4  (predict for XP_006584882.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100785713

.
gma-r.7
for
100785713

.
gma-m.5
for
100785713

.
mtr-u.5
for
11406059

.
mtr-u.5
for
11411289

.
ppo-u.5
for
18094417

.
ath-u.5
for
AT1G12400

.
osa-u.5
for
4338052

.
osa-u.5
for
4343686

.
zma-u.5
for
100281631

.


Ortholog ID: 8690
Species ath gma osa osa zma ppo mtr mtr tae tae hvu ghi ghi bna sbi sot cit bdi
Symbol AT1G12400 LOC100785713 LOC4338052 LOC4343686 LOC100281631 LOC18094417 LOC11411289 LOC11406059 LOC123071586 LOC123179906 LOC123439544 LOC107936378 LOC107946966 LOC106445585 LOC8068656 LOC102604697 LOC102612060 LOC104581277
Function* Nucleotide excision repair, TFIIH, subunit TTDA general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 REX1 DNA Repair family protein general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5-like general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5 RNA polymerase II transcription factor B subunit 5 uncharacterized LOC102604697 general transcription and DNA repair factor IIH subunit TFB5 general transcription and DNA repair factor IIH subunit TFB5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00020 Citrate cycle (TCA cycle) 3
ath00190 Oxidative phosphorylation 3
ath01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03050 Proteasome 2
gma03420 Nucleotide excision repair 2
gma00190 Oxidative phosphorylation 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 9
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr03022 Basal transcription factors 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03022 Basal transcription factors 2
hvu03420 Nucleotide excision repair 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
ghi04142 Lysosome 2
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 2
ghi00190 Oxidative phosphorylation 2
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 3
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837795 100785713 4338052 4343686 100281631 18094417 11411289 11406059 123071586 123179906 123439544 107936378 107946966 106445585 8068656 102604697 102612060 104581277
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