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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   HDA9   histone deacetylase 
 gma-r.7   HDA9   histone deacetylase 
 gma-m.5   HDA9   histone deacetylase 
 gma-u.5   HDA11   histone deacetylase 
 gma-u.5   HDA1   histone deacetylase 
 gma-u.5   HDA2   histone deacetylase 
 mtr-u.5   25494460   histone deacetylase 19 
 mtr-u.5   25490343   histone deacetylase 19 
 mtr-u.5   11446252   histone deacetylase 9 
 ppo-u.5   18098185   histone deacetylase 19 
 ppo-u.5   7496475   histone deacetylase 19 
 ppo-u.5   7490755   histone deacetylase 9 
 ath-u.5   HDA9   histone deacetylase 9 
 ath-u.5   HD1   histone deacetylase 1 
 vvi-u.5   100244967   histone deacetylase 19 
 vvi-u.5   100241833   histone deacetylase 19 
 vvi-u.5   100240976   histone deacetylase 9 
 sly-u.5   101251648   histone deacetylase 9 
 sly-u.5   HDA1   histone deacetylase 1 
 osa-u.5   4335765   histone deacetylase 9 
 osa-u.5   4328720   histone deacetylase 2-like 
 osa-u.5   4328717   histone deacetylase 3-like 
 zma-u.5   100193206   uncharacterized LOC100193206 
 zma-u.5   541931   histone deacetylase HDA101 
 zma-u.5   541953   histone deacetylase 

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Top 50 coexpressed genes to HDA9 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HDA9 (gma-u.5 coexpression data)

CoexMap"100786705"


gmaHDA9 | Entrez gene ID : 100786705    
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 3 2 3 2 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03082 [list] [network] ATP-dependent chromatin remodeling (120 genes)
gmx03083 [list] [network] Polycomb repressive complex (94 genes)
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (844 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (17 genes)  IEA  
Protein XP_003526730.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  mito 1  (predict for XP_003526730.1)
Subcellular
localization
TargetP
other 9  (predict for XP_003526730.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
HDA9

.
gma-r.7
for
HDA9

.
gma-m.5
for
HDA9

.
gma-u.5
for
HDA11

.
gma-u.5
for
HDA1

.
gma-u.5
for
HDA2

.
mtr-u.5
for
25494460

.
mtr-u.5
for
25490343

.
mtr-u.5
for
11446252

.
ppo-u.5
for
18098185

.
ppo-u.5
for
7496475

.
ppo-u.5
for
7490755

.
ath-u.5
for
HDA9

.
ath-u.5
for
HD1

.
vvi-u.5
for
100244967

.
vvi-u.5
for
100241833

.
vvi-u.5
for
100240976

.
sly-u.5
for
101251648

.
sly-u.5
for
HDA1

.
osa-u.5
for
4335765

.
osa-u.5
for
4328720

.
osa-u.5
for
4328717

.
zma-u.5
for
100193206

.
zma-u.5
for
541931

.
zma-u.5
for
541953

.


Ortholog ID: 1980
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol HD1 HDA9 HDA9 HDA1 HDA1 LOC101251648 LOC4328717 LOC4328720 LOC541953 LOC100193206 HD1 LOC103873661 LOC100240976 LOC100241833 LOC18098185 LOC7496475 LOC25490343 LOC25494460 LOC123127307 LOC123045390 LOC123426647 LOC123404168 LOC121220865 LOC107900973 LOC106430324 LOC106347665 CHLRE_06g277350v5 CHLRE_16g673150v5 LOC8075265 LOC8082952 LOC102596222 LOC102606021 LOC102612639 LOC102626043 LOC100846111 LOC100832825 LOC107823928 LOC107814744
Function* histone deacetylase 1 histone deacetylase 9 histone deacetylase histone deacetylase histone deacetylase 1 histone deacetylase 9 histone deacetylase 3-like histone deacetylase 2-like histone deacetylase uncharacterized LOC100193206 histone deacetylase 19 histone deacetylase 9 histone deacetylase 9 histone deacetylase 19 histone deacetylase 19 histone deacetylase 19 histone deacetylase 19 histone deacetylase 19 probable histone deacetylase 19 histone deacetylase 9 histone deacetylase 9 probable histone deacetylase 19 histone deacetylase 9 histone deacetylase 19 histone deacetylase 9 histone deacetylase 9 uncharacterized protein uncharacterized protein histone deacetylase 9 probable histone deacetylase 19 histone deacetylase 9 histone deacetylase 19 histone deacetylase 9 histone deacetylase 19 probable histone deacetylase 19 histone deacetylase 9 histone deacetylase 9 histone deacetylase 19
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 2
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 2
gma00330 Arginine and proline metabolism 2
gma01230 Biosynthesis of amino acids 2
gma04148 Efferocytosis 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
sly04120 Ubiquitin mediated proteolysis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 7
osa03082 ATP-dependent chromatin remodeling 2
osa03083 Polycomb repressive complex 2
osa03040 Spliceosome 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00280 Valine, leucine and isoleucine degradation 5
osa00310 Lysine degradation 3
osa00071 Fatty acid degradation 3
osa03082 ATP-dependent chromatin remodeling 2
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03082 ATP-dependent chromatin remodeling 3
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03082 ATP-dependent chromatin remodeling 3
tae03083 Polycomb repressive complex 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu04120 Ubiquitin mediated proteolysis 2
hvu04130 SNARE interactions in vesicular transport 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi03082 ATP-dependent chromatin remodeling 4
ghi03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna00480 Glutathione metabolism 3
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 4
bdi00020 Citrate cycle (TCA cycle) 3
bdi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00030 Pentose phosphate pathway 2
nta01200 Carbon metabolism 2
nta03050 Proteasome 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829969 823594 100786705 100779296 101254943 101251648 4328717 4328720 541953 100193206 103850038 103873661 100240976 100241833 18098185 7496475 25490343 25494460 123127307 123045390 123426647 123404168 121220865 107900973 106430324 106347665 5716284 5721417 8075265 8082952 102596222 102606021 102612639 102626043 100846111 100832825 107823928 107814744
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