ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100787133	cyclin-P3-1
gma-r.7	100787133	cyclin-P3-1
gma-u.5	100783668	cyclin-P3-1
gma-u.5	100794854	cyclin-U4-1
gma-u.5	100804706	cyclin-U1-1
mtr-u.5	25500113	cyclin-U4-1
mtr-u.5	11413228	cyclin-U1-1
mtr-u.5	11428922	cyclin-U4-1
ppo-u.5	18103858	cyclin-U4-1
ppo-u.5	7480042	cyclin-U3-1
ppo-u.5	18098790	cyclin-P3-1
ath-u.5	CYCP4;1	cyclin p4;1
ath-u.5	CYCP2;1	cyclin p2;1
ath-u.5	CYCP1;1	cyclin p1;1
vvi-u.5	100254595	cyclin-P3-1
vvi-u.5	100263322	cyclin-U4-1
sly-u.5	101248793	cyclin-U1-1
sly-u.5	101256326	cyclin-P3-1
sly-u.5	101251921	cyclin-U4-1
osa-u.5	9271995	cyclin-P1-1
osa-u.5	4349405	cyclin-P4-1-like
osa-u.5	4338711	cyclin-P3-1-like
zma-u.5	100283473	uncharacterized LOC100283473
zma-u.5	100502430	uncharacterized LOC100502430
zma-u.5	100284747	cyclin-dependent protein kinase

Annotation

functional annotation

KEGG

GO BP

GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity

(102 genes)

IEA

GO CC

GO MF

GO:0019901 [list] [network] protein kinase binding

(65 genes)

IEA

Protein

XP_040866222.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 3, chlo_mito 3

(predict for XP_040866222.1)

Subcellular
localization
TargetP

mito 3, other 3

(predict for XP_040866222.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100787133	gma-r.7 for 100787133	gma-u.5 for 100783668	gma-u.5 for 100794854	gma-u.5 for 100804706	mtr-u.5 for 25500113	mtr-u.5 for 11413228	mtr-u.5 for 11428922	ppo-u.5 for 18103858	ppo-u.5 for 7480042	ppo-u.5 for 18098790	ath-u.5 for CYCP4;1	ath-u.5 for CYCP2;1	ath-u.5 for CYCP1;1	vvi-u.5 for 100254595	vvi-u.5 for 100263322	sly-u.5 for 101248793	sly-u.5 for 101256326	sly-u.5 for 101251921	osa-u.5 for 9271995	osa-u.5 for 4349405	osa-u.5 for 4338711	zma-u.5 for 100283473	zma-u.5 for 100502430	zma-u.5 for 100284747

Ortholog

Ortholog ID: 426

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CYCP4;1

CYCP1;1

Function^*

cyclin box fold protein binding domain-containing protein

cyclin-U1-1-like

cyclin-U4-1

cyclin-U1-1

cyclin p4;1

cyclin p1;1

cyclin-U4-1

cyclin-U1-1

cyclin-U4-1

cyclin-U1-1

cyclin-U4-1-like

cyclin-U4-1

cyclin-U1-1

cyclin-U4-1

cyclin-P3-1

cyclin-U4-1

cyclin-P3-1-like

cyclin-U4-1-like

cyclin-P3-1-like

cyclin-P4-1-like

cyclin-P4-1

cyclin-dependent protein kinase

cyclin-P4-1

cyclin-P3-1-like

cyclin-P4-1-like

cyclin-P3-1

cyclin-P4-1

cyclin-P3-1

cyclin-P1-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	4
ppo00040	Pentose and glucuronate interconversions	3
ppo00053	Ascorbate and aldarate metabolism	3
ppo00520	Amino sugar and nucleotide sugar metabolism	3
ppo00541	Biosynthesis of various nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	3
ghi00905	Brassinosteroid biosynthesis	2
ghi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00710	Carbon fixation by Calvin cycle	3
bna01200	Carbon metabolism	3
bna00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	4
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	4
bdi00710	Carbon fixation by Calvin cycle	3
bdi00010	Glycolysis / Gluconeogenesis	2
bdi00030	Pentose phosphate pathway	2
bdi00051	Fructose and mannose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100305689

100527137

11428922

25500113

18103858

7485003

819082

825487

103866152

100261965

107929642

107933493

106402571

106454570

102622295

102629237

101248793

101251921

102587169

102581077

107795513

107784510

4338711

4336556

103627539

100284747

123054083

123091974

123441944

123427407

8076870

8055631

100824073

106865488

5727968

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100787133 (gma-u.5 coexpression data)

Top 50 enrichment test to 100787133 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	5	3	3	3	2	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100787133 (gma-u.5 coexpression data)

Top 50 enrichment test to 100787133 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**