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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100787602   protein SMG7 
 gma-r.7   100787602   protein SMG7 
 gma-m.5   100787602   protein SMG7 
 gma-u.5   100779982   protein SMG7 
 gma-u.5   100804837   protein SMG7 
 mtr-u.5   11431860   protein SMG7 
 mtr-u.5   25480553   protein SMG7 
 ppo-u.5   7480120   nonsense-mediated mRNA decay factor SMG7 
 ppo-u.5   7479669   nonsense-mediated mRNA decay factor SMG7 
 ath-u.5   SMG7   Telomerase activating protein Est1 
 vvi-u.5   100267161   nonsense-mediated mRNA decay factor SMG7 
 vvi-u.5   100264171   nonsense-mediated mRNA decay factor SMG7 
 sly-u.5   101247106   nonsense-mediated mRNA decay factor SMG7-like 
 sly-u.5   101244332   nonsense-mediated mRNA decay factor SMG7-like 
 osa-u.5   4345227   nonsense-mediated mRNA decay factor SMG7 
 zma-u.5   100384817   uncharacterized LOC100384817 
 zma-u.5   100278146   Protein SMG7 

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Top 50 coexpressed genes to 100787602 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100787602 (gma-u.5 coexpression data)

CoexMap"100787602"


gmaLOC100787602 | Entrez gene ID : 100787602      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 2 2 1 2 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03015 [list] [network] mRNA surveillance pathway (214 genes)
GO BP
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (26 genes)  IEA  
GO CC
GO:0005697 [list] [network] telomerase holoenzyme complex  (9 genes)  IEA  
GO MF
GO:0070034 [list] [network] telomerase RNA binding  (11 genes)  IEA  
GO:0042162 [list] [network] telomeric DNA binding  (100 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_003556922.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_003556922.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_003556922.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100787602

.
gma-r.7
for
100787602

.
gma-m.5
for
100787602

.
gma-u.5
for
100779982

.
gma-u.5
for
100804837

.
mtr-u.5
for
11431860

.
mtr-u.5
for
25480553

.
ppo-u.5
for
7480120

.
ppo-u.5
for
7479669

.
ath-u.5
for
SMG7

.
vvi-u.5
for
100267161

.
vvi-u.5
for
100264171

.
sly-u.5
for
101247106

.
sly-u.5
for
101244332

.
osa-u.5
for
4345227

.
zma-u.5
for
100384817

.
zma-u.5
for
100278146

.


Ortholog ID: 4441
Species ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol SMG7 LOC100787602 LOC100779982 LOC101247106 LOC101244332 LOC4345227 LOC100384817 LOC100278146 LOC103851271 LOC103845757 LOC100267161 LOC100264171 LOC7480120 LOC7479669 LOC25480553 LOC11431860 LOC123111500 LOC123103310 LOC123398020 LOC107953168 LOC107945036 LOC106367879 LOC106425770 CHLRE_16g648750v5 LOC110432804 LOC102596652 LOC102604630 LOC102607318 LOC100826571 LOC107766276 LOC107760707
Function* Telomerase activating protein Est1 protein SMG7 protein SMG7 nonsense-mediated mRNA decay factor SMG7-like nonsense-mediated mRNA decay factor SMG7-like nonsense-mediated mRNA decay factor SMG7 uncharacterized LOC100384817 Protein SMG7 protein SMG7 protein SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 protein SMG7 protein SMG7 protein SMG7 protein SMG7 protein SMG7 protein SMG7 protein SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 uncharacterized protein protein SMG7 protein SMG7 protein SMG7-like nonsense-mediated mRNA decay factor SMG7 protein SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 6
gma04382 Cornified envelope formation 2
gma00330 Arginine and proline metabolism 2
gma00410 beta-Alanine metabolism 2
gma00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 5
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra00562 Inositol phosphate metabolism 2
bra04070 Phosphatidylinositol signaling system 2
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi00270 Cysteine and methionine metabolism 2
vvi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo03018 RNA degradation 2
ppo03082 ATP-dependent chromatin remodeling 2
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo00561 Glycerolipid metabolism 2
ppo04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
mtr04120 Ubiquitin mediated proteolysis 2
mtr03018 RNA degradation 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 8
ghi03018 RNA degradation 2
ghi04144 Endocytosis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 8
ghi03018 RNA degradation 3
ghi04144 Endocytosis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna00561 Glycerolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna00561 Glycerolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03460 Fanconi anemia pathway 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03460 Fanconi anemia pathway 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832060 100787602 100779982 101247106 101244332 4345227 100384817 100278146 103851271 103845757 100267161 100264171 7480120 7479669 25480553 11431860 123111500 123103310 123398020 107953168 107945036 106367879 106425770 5723741 110432804 102596652 102604630 102607318 100826571 107766276 107760707
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