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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100791216   cleavage factor CFIM-25-like protein 
 gma-r.7   100791216   cleavage factor CFIM-25-like protein 
 gma-m.5   100791216   cleavage factor CFIM-25-like protein 
 mtr-u.5   25486436   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 ppo-u.5   7484650   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 ath-u.5   CFIM-25   homolog of CFIM-25 
 vvi-u.5   100250770   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 osa-u.5   4345502   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 zma-u.5   100280946   cleavage and polyadenylation specificity factor 5 

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Top 50 coexpressed genes to 100791216 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100791216 (gma-u.5 coexpression data)

CoexMap"100791216"


gmaLOC100791216 | Entrez gene ID : 100791216      
Species gma mtr ppo ath vvi osa zma tae hvu ghi bdi cit bra cre sbi bna sly nta sot
Paralog 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03015 [list] [network] mRNA surveillance pathway (214 genes)
GO BP
GO CC
GO:0005849 [list] [network] mRNA cleavage factor complex  (28 genes)  IEA  
GO MF
GO:0035925 [list] [network] mRNA 3'-UTR AU-rich region binding  (14 genes)  IEA  
Protein NP_001242595.2 [sequence] [blastp]
XP_040860730.1 [sequence] [blastp]
XP_040860731.1 [sequence] [blastp]
XP_040860732.1 [sequence] [blastp]
XP_040860733.1 [sequence] [blastp]
XP_040860734.1 [sequence] [blastp]
XP_040860735.1 [sequence] [blastp]
XP_040860736.1 [sequence] [blastp]
XP_040860737.1 [sequence] [blastp]
XP_040860738.1 [sequence] [blastp]
XP_040860739.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto_nucl 4,  cyto 1,  chlo 1,  plas 1,  extr 1,  chlo_mito 1  (predict for NP_001242595.2)
nucl 4,  cyto_nucl 3,  cyto 1,  chlo 1,  cysk 1,  plas 1,  extr 1,  chlo_mito 1  (predict for XP_040860730.1)
cyto_nucl 4,  nucl 3,  cyto 3,  chlo 1,  plas 1,  extr 1,  cysk 1,  chlo_mito 1,  cysk_plas 1  (predict for XP_040860731.1)
cyto_nucl 4,  nucl 3,  cyto 3,  chlo 1,  plas 1,  extr 1,  cysk 1,  chlo_mito 1,  cysk_plas 1  (predict for XP_040860732.1)
nucl 5,  cyto_nucl 4,  cyto 2,  chlo 1,  extr 1,  cysk 1  (predict for XP_040860733.1)
nucl 5,  cyto_nucl 4,  cyto 2,  chlo 1,  extr 1,  cysk 1  (predict for XP_040860734.1)
nucl 5,  cyto_nucl 4,  cyto 2,  chlo 1,  extr 1,  cysk 1  (predict for XP_040860735.1)
nucl 4,  cyto_nucl 4,  cyto 2,  chlo 1,  plas 1,  extr 1,  cysk 1,  cysk_plas 1  (predict for XP_040860736.1)
nucl 5,  cyto_nucl 4,  cyto 3  (predict for XP_040860737.1)
nucl 4,  cyto_nucl 4,  cyto 1,  chlo 1,  plas 1,  extr 1,  cysk 1,  chlo_mito 1,  cysk_plas 1  (predict for XP_040860738.1)
nucl 4,  cyto_nucl 4,  cyto 1,  chlo 1,  plas 1,  extr 1,  cysk 1,  chlo_mito 1,  cysk_plas 1  (predict for XP_040860739.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001242595.2)
other 9  (predict for XP_040860730.1)
other 9  (predict for XP_040860731.1)
other 9  (predict for XP_040860732.1)
other 9  (predict for XP_040860733.1)
other 9  (predict for XP_040860734.1)
other 9  (predict for XP_040860735.1)
other 9  (predict for XP_040860736.1)
other 9  (predict for XP_040860737.1)
other 9  (predict for XP_040860738.1)
other 9  (predict for XP_040860739.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100791216

.
gma-r.7
for
100791216

.
gma-m.5
for
100791216

.
mtr-u.5
for
25486436

.
ppo-u.5
for
7484650

.
ath-u.5
for
CFIM-25

.
vvi-u.5
for
100250770

.
osa-u.5
for
4345502

.
zma-u.5
for
100280946

.


Ortholog ID: 9612
Species ath gma osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CFIM-25 LOC100791216 LOC4345502 LOC100280946 LOC103853276 LOC100250770 LOC7484650 LOC25486436 LOC123160920 LOC123151266 LOC123409947 LOC107929890 LOC107907121 LOC125609831 LOC106416611 LOC8070039 LOC102593421 LOC102626492 LOC100831657 LOC107809284 LOC107784944
Function* homolog of CFIM-25 cleavage factor CFIM-25-like protein pre-mRNA cleavage factor Im 25 kDa subunit 1 cleavage and polyadenylation specificity factor 5 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1-like pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 2
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00071 Fatty acid degradation 3
bra04146 Peroxisome 2
bra04136 Autophagy - other 2
bra00410 beta-Alanine metabolism 2
bra00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 3
ppo00040 Pentose and glucuronate interconversions 2
ppo00051 Fructose and mannose metabolism 2
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00052 Galactose metabolism 6
mtr04120 Ubiquitin mediated proteolysis 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
tae03015 mRNA surveillance pathway 3
tae00561 Glycerolipid metabolism 3
tae00564 Glycerophospholipid metabolism 3
tae04070 Phosphatidylinositol signaling system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 4
hvu04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 5
ghi00908 Zeatin biosynthesis 4
ghi04075 Plant hormone signal transduction 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00941 Flavonoid biosynthesis 7
ghi04712 Circadian rhythm - plant 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 4
bna04145 Phagosome 2
bna04148 Efferocytosis 2
bna04141 Protein processing in endoplasmic reticulum 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 3
bna04141 Protein processing in endoplasmic reticulum 2
bna03020 RNA polymerase 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00561 Glycerolipid metabolism 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 6
bdi04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta00020 Citrate cycle (TCA cycle) 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta01200 Carbon metabolism 2
nta01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 6
nta04075 Plant hormone signal transduction 6
nta03015 mRNA surveillance pathway 2
nta00902 Monoterpenoid biosynthesis 2
nta00020 Citrate cycle (TCA cycle) 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829104 100791216 4345502 100280946 103853276 100250770 7484650 25486436 123160920 123151266 123409947 107929890 107907121 125609831 106416611 8070039 102593421 102626492 100831657 107809284 107784944
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