ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	TIP4-1	aquaporin TIP4-1
gma-u.5	100814469	aquaporin TIP3-3
ath-u.5	GAMMA-TIP	gamma tonoplast intrinsic protein
ath-u.5	DELTA-TIP	delta tonoplast integral protein
bra-r.6	103875293	aquaporin TIP1-2
bra-r.6	103830763	aquaporin TIP3-1
vvi-u.5	100263698	aquaporin TIP1-1
ghi-r.1	107929356	probable aquaporin TIP-type
ghi-r.1	107931794	probable aquaporin TIP1-2
ghi-r.1	107932296	probable aquaporin TIP-type
bna-r.1	106452220	aquaporin TIP2-1
bna-r.1	125585648	aquaporin TIP1-1
bna-r.1	125587804	aquaporin TIP2-3-like
cit-r.1	102611770	aquaporin TIP4-1
cit-r.1	102621052	aquaporin TIP1-3
cit-r.1	102624065	aquaporin TIP2-1
sly-u.5	778315	aquaporin-like
sly-u.5	TIP	TIP protein
sly-u.5	101245626	aquaporin TIP2-1
sot-r.1	102587828	aquaporin TIP1-3-like
sot-r.1	102591890	probable aquaporin TIP1-1
sot-r.1	102603645	aquaporin TIP2-1
nta-r.1	107802859	putative aquaporin TIP-type RB7-18C
nta-r.1	107801866	aquaporin TIP2-1-like
nta-r.1	107794022	aquaporin TIP1-1-like
osa-u.5	4324276	probable aquaporin TIP4-3
osa-u.5	4324277	probable aquaporin TIP4-2
osa-u.5	4324303	probable aquaporin TIP1-2
zma-u.5	541675	tonoplast intrinsic protein 1
zma-u.5	541687	porin 2
zma-u.5	103646186	probable aquaporin TIP3-2
tae-r.2	123065225	aquaporin TIP4-4
tae-r.2	123065226	probable aquaporin TIP4-2
tae-r.2	123072891	probable aquaporin TIP1-2
hvu-r.1	123407685	probable aquaporin TIP2-2
hvu-r.1	123402410	probable aquaporin TIP2-1
hvu-r.1	123449894	probable aquaporin TIP4-1
sbi-r.1	8076232	aquaporin TIP2-1
sbi-r.1	8080564	aquaporin TIP1-1
bdi-r.1	100838472	probable aquaporin TIP4-1
bdi-r.1	100843246	probable aquaporin TIP1-2
cre-r.1	CHLRE_12g549300v5	uncharacterized protein

Top 50 coexpressed genes to TIP4-1 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to TIP4-1 (gma-u.5 coexpression data)

CoexMap"100793258"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006833 [list] [network] water transport	(24 genes)	IEA
GO:0055085 [list] [network] transmembrane transport	(1780 genes)	IEA

GO CC

GO:0016020 [list] [network] membrane

(5894 genes)

IEA

GO MF

GO:0015250 [list] [network] water channel activity

(56 genes)

IEA

Protein

NP_001242569.2 [sequence] [blastp]
XP_006581008.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, vacu 3, chlo 1, plas 1, E.R. 1, chlo_mito 1, cysk_nucl 1, E.R._plas 1	(predict for NP_001242569.2)
cyto 4, vacu 3, chlo 1, plas 1, E.R. 1, chlo_mito 1, cysk_nucl 1, E.R._plas 1	(predict for XP_006581008.1)

Subcellular
localization
TargetP

other 9, scret 3	(predict for NP_001242569.2)
other 9, scret 3	(predict for XP_006581008.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for TIP4-1	gma-u.5 for 100814469	ath-u.5 for GAMMA-TIP	ath-u.5 for DELTA-TIP	bra-r.6 for 103875293	bra-r.6 for 103830763	vvi-u.5 for 100263698	ghi-r.1 for 107929356	ghi-r.1 for 107931794	ghi-r.1 for 107932296	bna-r.1 for 106452220	bna-r.1 for 125585648	bna-r.1 for 125587804	cit-r.1 for 102611770	cit-r.1 for 102621052	cit-r.1 for 102624065	sly-u.5 for 778315	sly-u.5 for TIP	sly-u.5 for 101245626	sot-r.1 for 102587828	sot-r.1 for 102591890	sot-r.1 for 102603645	nta-r.1 for 107802859	nta-r.1 for 107801866	nta-r.1 for 107794022	osa-u.5 for 4324276	osa-u.5 for 4324277	osa-u.5 for 4324303	zma-u.5 for 541675	zma-u.5 for 541687	zma-u.5 for 103646186	tae-r.2 for 123065225	tae-r.2 for 123065226	tae-r.2 for 123072891	hvu-r.1 for 123407685	hvu-r.1 for 123402410	hvu-r.1 for 123449894	sbi-r.1 for 8076232	sbi-r.1 for 8080564	bdi-r.1 for 100838472	bdi-r.1 for 100843246	cre-r.1 for CHLRE_12g549300v5

Ortholog

Ortholog ID: 83

Species

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

TIP2;2

TIP1;2

TIP1;1

TIP2-2

Function^*

aquaporin TIP2-5

aquaporin TIP2-1

aquaporin TIP4-1

probable aquaporin TIP-type RB7-5A

gamma tonoplast intrinsic protein

tonoplast intrinsic protein 2;2

probable aquaporin TIP3-2

probable aquaporin TIP2-2

aquaporin TIP1-1

aquaporin-like

probable aquaporin TIP-type

aquaporin TIP1-1

probable aquaporin TIP1-2

aquaporin TIP3-1

aquaporin TIP1-3

aquaporin TIP4-1

aquaporin TIP2-1

probable aquaporin TIP2-2

aquaporin-like

tonoplast intrinsic protein 2.2

probable aquaporin TIP5-1

probable aquaporin TIP3-2

aquaporin TIP1-1

aquaporin TIP2-1-like

putative aquaporin TIP-type RB7-18C

putative aquaporin TIP1-1

probable aquaporin TIP1-1

probable aquaporin TIP3-2

probable aquaporin TIP3-1

aquaporin TIP2-3-like

aquaporin TIP4-2-like

aquaporin TIP2-3

probable aquaporin TIP2-2

probable aquaporin TIP4-1

probable aquaporin TIP3-1

aquaporin TIP4-4

aquaporin TIP4-2

probable aquaporin TIP4-1

probable aquaporin TIP4-2

probable aquaporin TIP4-3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	2
mtr00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00999	Biosynthesis of various plant secondary metabolites	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00592	alpha-Linolenic acid metabolism	2
sot01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot02010	ABC transporters	4
sot00940	Phenylpropanoid biosynthesis	4
sot00910	Nitrogen metabolism	2
sot00620	Pyruvate metabolism	2
sot00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00740	Riboflavin metabolism	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00561	Glycerolipid metabolism	3
tae00600	Sphingolipid metabolism	3
tae00603	Glycosphingolipid biosynthesis - globo and isoglobo series	3
tae00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00073	Cutin, suberine and wax biosynthesis	2
bdi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	5
bdi00630	Glyoxylate and dicarboxylate metabolism	4
bdi04146	Peroxisome	3
bdi00250	Alanine, aspartate and glutamate metabolism	2
bdi00260	Glycine, serine and threonine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100805635

11435009

11432805

11428968

818255

827446

103872561

103868228

100263698

100233004

100233003

107929356

121216027

121212692

106399493

106426631

102611770

102624065

102627157

778315

101055566

101261595

102602512

102589703

102596615

107801866

107802889

107830277

4331608

4336464

4348981

103646110

103635714

123041819

100037645

123449894

123409954

8078102

8066640

100838472

100838461

100844557

5719640

The preparation time of this page was 0.2 [sec].


Species	gma	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	ppo	mtr
Paralog	2	2	2	1	3	3	3	3	3	3	3	3	3	3	2	2	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to TIP4-1 (gma-u.5 coexpression data)

Top 50 enrichment test to TIP4-1 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**