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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   DW1   ent-kaurene synthase 
 gma-r.7   DW1   ent-kaurene synthase 
 gma-m.5   DW1   ent-kaurene synthase 
 mtr-u.5   11446526   ent-kaurene synthase, chloroplastic 
 mtr-u.5   25486907   ent-kaurene synthase TSP4, chloroplastic 
 ppo-u.5   18101433   ent-kaur-16-ene synthase, chloroplastic 
 ath-u.5   GA2   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 vvi-u.5   100267397   ent-kaurene synthase TSP4, chloroplastic 
 sly-u.5   TPS24   ent-kaurene synthase 
 osa-u.5   4352248   ent-sandaracopimara-8(14),15-diene synthase-like 
 osa-u.5   4350502   stemar-13-ene synthase-like 
 zma-u.5   103645955   ent-kaur-16-ene synthase, chloroplastic 
 zma-u.5   109943181   ent-kaur-16-ene synthase, chloroplastic 

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Top 50 coexpressed genes to DW1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to DW1 (gma-u.5 coexpression data)

CoexMap"100793849"


gmaDW1 | Entrez gene ID : 100793849      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00904 [list] [network] Diterpenoid biosynthesis (59 genes)
GO BP
GO:0009686 [list] [network] gibberellin biosynthetic process  (23 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1168 genes)  IEA  
GO MF
GO:0010333 [list] [network] terpene synthase activity  (25 genes)  IEA  
GO:0000287 [list] [network] magnesium ion binding  (175 genes)  IEA  
Protein XP_006585394.1 [sequence] [blastp]
XP_006585395.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 3,  nucl 2,  E.R._vacu 2,  vacu 1,  cyto_nucl 1,  nucl_plas 1  (predict for XP_006585394.1)
nucl 3,  E.R. 2,  extr 1,  cysk_nucl 1,  cyto_E.R. 1,  plas 1,  E.R._vacu 1,  mito_plas 1  (predict for XP_006585395.1)
Subcellular
localization
TargetP
chlo 3  (predict for XP_006585394.1)
other 7  (predict for XP_006585395.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
DW1

.
gma-r.7
for
DW1

.
gma-m.5
for
DW1

.
mtr-u.5
for
11446526

.
mtr-u.5
for
25486907

.
ppo-u.5
for
18101433

.
ath-u.5
for
GA2

.
vvi-u.5
for
100267397

.
sly-u.5
for
TPS24

.
osa-u.5
for
4352248

.
osa-u.5
for
4350502

.
zma-u.5
for
103645955

.
zma-u.5
for
109943181

.


Ortholog ID: 2304
Species ath gma sly osa osa zma zma bra vvi ppo mtr mtr hvu hvu ghi ghi bna bna sbi sot cit bdi bdi nta nta
Symbol GA2 DW1 TPS24 LOC4329728 LOC4329729 LOC103645955 LOC109943181 LOC103832422 LOC100267397 LOC18101433 LOC25486907 LOC11446526 LOC123429122 LOC123427634 LOC107916812 LOC107921168 LOC106430723 LOC106354788 LOC8063956 LOC102602928 LOC102609462 LOC100828967 LOC100827748 LOC107795749 LOC107825637
Function* Terpenoid cyclases/Protein prenyltransferases superfamily protein ent-kaurene synthase ent-kaurene synthase ent-pimara-8(14),15-diene synthase-like ent-isokaur-15-ene synthase-like ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaurene synthase TSP4, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaurene synthase TSP4, chloroplastic ent-kaurene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic-like ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic-like ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaurene synthase TSP4, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaurene synthase TSP4, chloroplastic ent-kaurene synthase TSP4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00904 Diterpenoid biosynthesis 6
osa00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00904 Diterpenoid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00904 Diterpenoid biosynthesis 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 8
mtr00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00904 Diterpenoid biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00941 Flavonoid biosynthesis 2
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi00904 Diterpenoid biosynthesis 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi00904 Diterpenoid biosynthesis 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 7
bna00250 Alanine, aspartate and glutamate metabolism 4
bna00650 Butanoate metabolism 4
bna00410 beta-Alanine metabolism 2
bna00430 Taurine and hypotaurine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 7
bna00250 Alanine, aspartate and glutamate metabolism 4
bna00650 Butanoate metabolism 4
bna00270 Cysteine and methionine metabolism 3
bna00920 Sulfur metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00562 Inositol phosphate metabolism 2
sot04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00904 Diterpenoid biosynthesis 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00904 Diterpenoid biosynthesis 2
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844284 100793849 101252605 4329728 4329729 103645955 109943181 103832422 100267397 18101433 25486907 11446526 123429122 123427634 107916812 107921168 106430723 106354788 8063956 102602928 102609462 100828967 100827748 107795749 107825637
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