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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100793998   general transcription factor IIE subunit 2 
 gma-r.7   100793998   general transcription factor IIE subunit 2 
 gma-u.5   100802433   general transcription factor IIE subunit 2 
 gma-u.5   100792075   transcription initiation factor IIE subunit beta 
 gma-u.5   100788089   transcription initiation factor IIE subunit beta-like 
 mtr-u.5   25502025   general transcription factor IIE subunit 2 
 mtr-u.5   11443092   transcription initiation factor IIE subunit beta 
 ppo-u.5   7478059   uncharacterized LOC7478059 
 ath-u.5   AT4G20330   Transcription initiation factor TFIIE, beta subunit 
 bra-r.6   103853535   transcription initiation factor IIE subunit beta 
 vvi-u.5   100261481   uncharacterized LOC100261481 
 vvi-u.5   100259920   uncharacterized LOC100259920 
 ghi-r.1   107922749   general transcription factor IIE subunit 2 
 ghi-r.1   107930064   general transcription factor IIE subunit 2 
 ghi-r.1   107904490   general transcription factor IIE subunit 2 
 bna-r.1   106401615   transcription initiation factor IIE subunit beta 
 cit-r.1   102622567   uncharacterized LOC102622567 
 sly-u.5   101250226   uncharacterized LOC101250226 
 sot-r.1   102599084   uncharacterized LOC102599084 
 nta-r.1   107831153   uncharacterized LOC107831153 
 nta-r.1   107807528   uncharacterized LOC107807528 
 osa-u.5   4348554   uncharacterized LOC4348554 
 zma-u.5   100192795   uncharacterized LOC100192795 
 hvu-r.1   123449595   uncharacterized LOC123449595 
 hvu-r.1   123402301   uncharacterized LOC123402301 
 sbi-r.1   8072318   uncharacterized LOC8072318 
 sbi-r.1   8082027   general transcription factor IIE subunit 2 
 bdi-r.1   100841072   uncharacterized LOC100841072 
 bdi-r.1   100823282   uncharacterized LOC100823282 
 cre-r.1   CHLRE_12g512700v5   uncharacterized protein 

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Top 50 coexpressed genes to 100793998 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100793998 (gma-u.5 coexpression data)

CoexMap"100793998"


gmaLOC100793998 | Entrez gene ID : 100793998      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma hvu sbi bdi cre tae
Paralog 5 2 1 1 1 2 3 1 1 1 1 2 1 1 2 2 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03022 [list] [network] Basal transcription factors (90 genes)
GO BP
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (62 genes)  IEA  
GO CC
GO:0005673 [list] [network] transcription factor TFIIE complex  (8 genes)  IEA  
GO MF
GO:0001097 [list] [network] TFIIH-class transcription factor complex binding  (4 genes)  IEA  
Protein XP_003532609.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3  (predict for XP_003532609.1)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for XP_003532609.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100793998
gma-r.7
for
100793998
gma-u.5
for
100802433
gma-u.5
for
100792075
gma-u.5
for
100788089
mtr-u.5
for
25502025
mtr-u.5
for
11443092
ppo-u.5
for
7478059
ath-u.5
for
AT4G20330
bra-r.6
for
103853535
vvi-u.5
for
100261481
vvi-u.5
for
100259920
ghi-r.1
for
107922749
ghi-r.1
for
107930064
ghi-r.1
for
107904490
bna-r.1
for
106401615
cit-r.1
for
102622567
sly-u.5
for
101250226
sot-r.1
for
102599084
nta-r.1
for
107831153
nta-r.1
for
107807528
osa-u.5
for
4348554
zma-u.5
for
100192795
hvu-r.1
for
123449595
hvu-r.1
for
123402301
sbi-r.1
for
8072318
sbi-r.1
for
8082027
bdi-r.1
for
100841072
bdi-r.1
for
100823282
cre-r.1
for
CHLRE_12g512700v5


Ortholog ID: 3480
Species gma gma gma mtr mtr ppo ath bra vvi vvi ghi ghi ghi bna bna cit sly sot nta nta osa zma tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC100802433 LOC100792075 LOC100788089 LOC25502025 LOC11443092 LOC7478059 AT4G20330 LOC103853535 LOC100261481 LOC100259920 LOC107922749 LOC107930064 LOC107926989 LOC106401615 LOC106396961 LOC102622567 LOC101250226 LOC102599084 LOC107831153 LOC107807528 LOC4348554 LOC100192795 LOC123098635 LOC123449595 LOC123402301 LOC8072318 LOC8082027 LOC100841072 LOC100823282 CHLRE_12g512700v5
Function* general transcription factor IIE subunit 2 transcription initiation factor IIE subunit beta transcription initiation factor IIE subunit beta-like general transcription factor IIE subunit 2 transcription initiation factor IIE subunit beta uncharacterized LOC7478059 Transcription initiation factor TFIIE, beta subunit transcription initiation factor IIE subunit beta uncharacterized LOC100261481 uncharacterized LOC100259920 general transcription factor IIE subunit 2 general transcription factor IIE subunit 2 general transcription factor IIE subunit 2 transcription initiation factor IIE subunit beta transcription initiation factor IIE subunit beta-like uncharacterized LOC102622567 uncharacterized LOC101250226 uncharacterized LOC102599084 uncharacterized LOC107831153 uncharacterized LOC107807528 uncharacterized LOC4348554 uncharacterized LOC100192795 uncharacterized LOC123098635 uncharacterized LOC123449595 uncharacterized LOC123402301 uncharacterized LOC8072318 general transcription factor IIE subunit 2 uncharacterized LOC100841072 uncharacterized LOC100823282 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
mtr03022 Basal transcription factors 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
ath03040 Spliceosome 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi01250 Biosynthesis of nucleotide sugars 2
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 3
vvi00190 Oxidative phosphorylation 2
vvi04142 Lysosome 2
vvi04145 Phagosome 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 3
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 3
nta04075 Plant hormone signal transduction 3
nta04626 Plant-pathogen interaction 3
nta03008 Ribosome biogenesis in eukaryotes 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 3
nta04075 Plant hormone signal transduction 3
nta04626 Plant-pathogen interaction 3
nta03022 Basal transcription factors 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 5
zma03008 Ribosome biogenesis in eukaryotes 2
zma04712 Circadian rhythm - plant 2
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae00020 Citrate cycle (TCA cycle) 3
tae00310 Lysine degradation 3
tae00380 Tryptophan metabolism 3
tae00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 7
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04145 Phagosome 6
bdi04144 Endocytosis 4
bdi04148 Efferocytosis 4
bdi04141 Protein processing in endoplasmic reticulum 3
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
bdi04517 IgSF CAM signaling 2
bdi05100 Bacterial invasion of epithelial cells 2
bdi03050 Proteasome 2
bdi00190 Oxidative phosphorylation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100802433 100792075 100788089 25502025 11443092 7478059 827781 103853535 100261481 100259920 107922749 107930064 107926989 106401615 106396961 102622567 101250226 102599084 107831153 107807528 4348554 100192795 123098635 123449595 123402301 8072318 8082027 100841072 100823282 5716609
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