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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100795174   nuclear nucleic acid-binding protein C1D 
 gma-r.7   100795174   nuclear nucleic acid-binding protein C1D 
 gma-m.5   100795174   nuclear nucleic acid-binding protein C1D 
 gma-u.5   100500667   uncharacterized LOC100500667 
 mtr-u.5   11432979   uncharacterized LOC11432979 
 mtr-u.5   11431486   nuclear nucleic acid-binding protein C1D 
 ppo-u.5   7465425   uncharacterized LOC7465425 
 ppo-u.5   7489156   uncharacterized LOC7489156 
 ath-u.5   AT5G25080   Sas10/Utp3/C1D family 
 vvi-u.5   100243947   uncharacterized LOC100243947 
 sly-u.5   101259554   uncharacterized LOC101259554 
 osa-u.5   4345136   uncharacterized LOC4345136 
 zma-u.5   100277089   uncharacterized LOC100277089 

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Top 50 coexpressed genes to 100795174 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100795174 (gma-u.5 coexpression data)

CoexMap"100795174"


gmaLOC100795174 | Entrez gene ID : 100795174      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03018 [list] [network] RNA degradation (191 genes)
GO BP
GO:0000460 [list] [network] maturation of 5.8S rRNA  (59 genes)  IEA  
GO:0010468 [list] [network] regulation of gene expression  (3741 genes)  IEA  
GO CC
GO:0000178 [list] [network] exosome (RNase complex)  (34 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (353 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (3517 genes)  IEA  
Protein XP_003526147.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  extr 1  (predict for XP_003526147.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for XP_003526147.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100795174

.
gma-r.7
for
100795174

.
gma-m.5
for
100795174

.
gma-u.5
for
100500667

.
mtr-u.5
for
11432979

.
mtr-u.5
for
11431486

.
ppo-u.5
for
7465425

.
ppo-u.5
for
7489156

.
ath-u.5
for
AT5G25080

.
vvi-u.5
for
100243947

.
sly-u.5
for
101259554

.
osa-u.5
for
4345136

.
zma-u.5
for
100277089

.


Ortholog ID: 7736
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT5G25080 LOC100795174 LOC100500667 LOC101259554 LOC4345136 LOC100277089 LOC103874375 LOC103837076 LOC100243947 LOC7489156 LOC7465425 LOC11432979 LOC11431486 LOC123156550 LOC123149022 LOC123407459 LOC107906821 LOC107958981 LOC106365994 LOC106410889 LOC8067973 LOC102589730 LOC102630867 LOC100834810 LOC107825425 LOC107828515
Function* Sas10/Utp3/C1D family nuclear nucleic acid-binding protein C1D uncharacterized LOC100500667 uncharacterized LOC101259554 uncharacterized LOC4345136 uncharacterized LOC100277089 nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D uncharacterized LOC100243947 uncharacterized LOC7489156 uncharacterized LOC7465425 uncharacterized LOC11432979 nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D uncharacterized LOC102630867 nuclear nucleic acid-binding protein C1D uncharacterized LOC107825425 uncharacterized LOC107828515
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 11
gma00710 Carbon fixation by Calvin cycle 10
gma00010 Glycolysis / Gluconeogenesis 9
gma01230 Biosynthesis of amino acids 7
gma00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00790 Folate biosynthesis 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
mtr00240 Pyrimidine metabolism 2
mtr01232 Nucleotide metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr03082 ATP-dependent chromatin remodeling 3
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03008 Ribosome biogenesis in eukaryotes 3
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 8
ghi04141 Protein processing in endoplasmic reticulum 8
ghi03050 Proteasome 7
ghi03018 RNA degradation 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi03420 Nucleotide excision repair 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi03018 RNA degradation 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 4
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03060 Protein export 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit00300 Lysine biosynthesis 2
cit01230 Biosynthesis of amino acids 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04122 Sulfur relay system 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03018 RNA degradation 2
nta00061 Fatty acid biosynthesis 2
nta00062 Fatty acid elongation 2
nta01212 Fatty acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832579 100795174 100500667 101259554 4345136 100277089 103874375 103837076 100243947 7489156 7465425 11432979 11431486 123156550 123149022 123407459 107906821 107958981 106365994 106410889 8067973 102589730 102630867 100834810 107825425 107828515
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