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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   PTF1   transcription factor bHLH48-like 
 gma-r.7   PTF1   transcription factor bHLH48-like 
 gma-m.5   PTF1   transcription factor bHLH48-like 
 gma-u.5   100814124   transcription factor bHLH48 
 gma-u.5   100799133   transcription factor bHLH48 
 gma-u.5   100810862   transcription factor bHLH48 
 mtr-u.5   11431256   transcription factor bHLH60 
 mtr-u.5   11421654   transcription factor bHLH48 
 ppo-u.5   7468956   transcription factor bHLH48 
 ppo-u.5   18099855   transcription factor bHLH48 
 ath-u.5   AT2G42300   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT3G57800   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 vvi-u.5   100241856   transcription factor bHLH48 
 sly-u.5   101258908   transcription factor bHLH48 
 osa-u.5   4341525   transcription factor bHLH48 
 zma-u.5   100273300   uncharacterized LOC100273300 
 zma-u.5   103629727   transcription factor bHLH48 

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Top 50 coexpressed genes to PTF1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PTF1 (gma-u.5 coexpression data)

CoexMap"100795486"


gmaPTF1 | Entrez gene ID : 100795486    
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 2 2 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (3122 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (899 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (2313 genes)  IEA  
Protein NP_001242250.1 [sequence] [blastp]
XP_006603716.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001242250.1)
nucl 9  (predict for XP_006603716.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001242250.1)
other 8  (predict for XP_006603716.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
PTF1

.
gma-r.7
for
PTF1

.
gma-m.5
for
PTF1

.
gma-u.5
for
100814124

.
gma-u.5
for
100799133

.
gma-u.5
for
100810862

.
mtr-u.5
for
11431256

.
mtr-u.5
for
11421654

.
ppo-u.5
for
7468956

.
ppo-u.5
for
18099855

.
ath-u.5
for
AT2G42300

.
ath-u.5
for
AT3G57800

.
vvi-u.5
for
100241856

.
sly-u.5
for
101258908

.
osa-u.5
for
4341525

.
zma-u.5
for
100273300

.
zma-u.5
for
103629727

.


Ortholog ID: 4057
Species ath ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT2G42300 AT3G57800 LOC100814124 PTF1 LOC101258908 LOC4341525 LOC100273300 LOC103629727 LOC103830121 LOC103841682 LOC100241856 LOC18099855 LOC7468956 LOC11431256 LOC11421654 LOC123160148 LOC123153536 LOC123411689 LOC121213998 LOC107924526 LOC106390275 LOC106438441 LOC8082443 LOC102582980 LOC102609347 LOC100823833 LOC107800340 LOC107823459
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH48 transcription factor bHLH48-like transcription factor bHLH48 transcription factor bHLH48 uncharacterized LOC100273300 transcription factor bHLH48 transcription factor bHLH60 transcription factor bHLH60 transcription factor bHLH48 transcription factor bHLH48 transcription factor bHLH48 transcription factor bHLH60 transcription factor bHLH48 transcription factor bHLH48 transcription factor bHLH48 transcription factor bHLH48-like transcription factor bHLH60 transcription factor bHLH48 transcription factor bHLH60 transcription factor bHLH60-like transcription factor bHLH48 transcription factor bHLH48-like transcription factor bHLH48 transcription factor bHLH48 transcription factor bHLH48-like transcription factor bHLH48
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00561 Glycerolipid metabolism 3
mtr00071 Fatty acid degradation 2
mtr00620 Pyruvate metabolism 2
mtr01200 Carbon metabolism 2
mtr00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00062 Fatty acid elongation 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00062 Fatty acid elongation 3
tae04626 Plant-pathogen interaction 3
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00592 alpha-Linolenic acid metabolism 2
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00592 alpha-Linolenic acid metabolism 2
ghi03010 Ribosome 2
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00073 Cutin, suberine and wax biosynthesis 4
nta00010 Glycolysis / Gluconeogenesis 2
nta00053 Ascorbate and aldarate metabolism 2
nta00071 Fatty acid degradation 2
nta00280 Valine, leucine and isoleucine degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818831 825530 100814124 100795486 101258908 4341525 100273300 103629727 103830121 103841682 100241856 18099855 7468956 11431256 11421654 123160148 123153536 123411689 121213998 107924526 106390275 106438441 8082443 102582980 102609347 100823833 107800340 107823459
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