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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100799430   S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 
 gma-r.7   100799430   S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 
 gma-u.5   100791920   probable methyltransferase PMT28 
 mtr-u.5   25482134   S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 
 ppo-u.5   112326647   S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 
 ath-u.5   AT1G75200   flavodoxin family protein / radical SAM domain-containing protein 
 vvi-u.5   100255870   S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 
 sly-u.5   109120154   probable methyltransferase PMT26 
 osa-u.5   4334285   S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like 
 zma-u.5   100273754   uncharacterized LOC100273754 

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Top 50 coexpressed genes to 100799430 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100799430 (gma-u.5 coexpression data)

CoexMap"100799430"


gmaLOC100799430 | Entrez gene ID : 100799430      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031591 [list] [network] wybutosine biosynthetic process  (3 genes)  IEA  
GO CC
GO MF
GO:0051539 [list] [network] 4 iron, 4 sulfur cluster binding  (57 genes)  IEA  
GO:0010181 [list] [network] FMN binding  (72 genes)  IEA  
GO:0003824 [list] [network] catalytic activity  (14584 genes)  IEA  
Protein XP_003544413.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_003544413.1)
Subcellular
localization
TargetP
scret 7  (predict for XP_003544413.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100799430

.
gma-r.7
for
100799430

.
gma-u.5
for
100791920

.
mtr-u.5
for
25482134

.
ppo-u.5
for
112326647

.
ath-u.5
for
AT1G75200

.
vvi-u.5
for
100255870

.
sly-u.5
for
109120154

.
osa-u.5
for
4334285

.
zma-u.5
for
100273754

.


Ortholog ID: 9296
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sot cit bdi nta nta
Symbol AT1G75200 LOC100791920 LOC100799430 LOC109120154 LOC4334285 LOC100273754 LOC103830661 LOC100255870 LOC112326647 LOC25482134 LOC123113472 LOC123122993 LOC123452458 LOC107917904 LOC107922369 LOC106353668 LOC106406196 CHLRE_14g623300v5 LOC102581860 LOC102607821 LOC100846034 LOC107774095 LOC107805091
Function* flavodoxin family protein / radical SAM domain-containing protein probable methyltransferase PMT28 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase probable methyltransferase PMT26 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like uncharacterized LOC100273754 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase uncharacterized protein S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase uncharacterized LOC100846034 uncharacterized LOC107774095 putative methyltransferase PMT28
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 4
sly00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03040 Spliceosome 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi00860 Porphyrin metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi00860 Porphyrin metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03013 Nucleocytoplasmic transport 2
bna00061 Fatty acid biosynthesis 2
bna00780 Biotin metabolism 2
bna01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03013 Nucleocytoplasmic transport 2
bna04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit04142 Lysosome 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00062 Fatty acid elongation 4
bdi01040 Biosynthesis of unsaturated fatty acids 4
bdi01212 Fatty acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
nta00053 Ascorbate and aldarate metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 3
nta03040 Spliceosome 2
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
nta00053 Ascorbate and aldarate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843857 100791920 100799430 109120154 4334285 100273754 103830661 100255870 112326647 25482134 123113472 123122993 123452458 107917904 107922369 106353668 106406196 5718415 102581860 102607821 100846034 107774095 107805091
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