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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100799459   DNA polymerase delta subunit 4 
 gma-r.7   100799459   DNA polymerase delta subunit 4 
 gma-u.5   100778329   DNA polymerase delta subunit 4 
 mtr-u.5   25493349   DNA polymerase delta subunit 4 
 ppo-u.5   7493896   DNA polymerase delta subunit 4 
 ppo-u.5   7491082   uncharacterized LOC7491082 
 ath-u.5   POLD4   polymerase delta 4 
 vvi-u.5   100263057   uncharacterized LOC100263057 
 sly-u.5   101262116   uncharacterized LOC101262116 
 sly-u.5   101255630   uncharacterized LOC101255630 
 osa-u.5   4344737   uncharacterized LOC4344737 
 osa-u.5   4347604   uncharacterized LOC4347604 
 zma-u.5   100282638   polymerase delta 4 
 zma-u.5   100280534   delta DNA polymerase 

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Top 50 coexpressed genes to 100799459 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100799459 (gma-u.5 coexpression data)

CoexMap"100799459"


gmaLOC100799459 | Entrez gene ID : 100799459      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 2 1 1 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03030 [list] [network] DNA replication (69 genes)
gmx03410 [list] [network] Base excision repair (77 genes)
gmx03420 [list] [network] Nucleotide excision repair (129 genes)
gmx03430 [list] [network] Mismatch repair (49 genes)
gmx03440 [list] [network] Homologous recombination (74 genes)
GO BP
GO:0000731 [list] [network] DNA synthesis involved in DNA repair  (5 genes)  IEA  
GO:0006261 [list] [network] DNA-templated DNA replication  (141 genes)  IEA  
GO CC
GO:0043625 [list] [network] delta DNA polymerase complex  (8 genes)  IEA  
GO MF
GO:0003887 [list] [network] DNA-directed DNA polymerase activity  (30 genes)  IEA  
Protein XP_003531071.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto_nucl 3,  cyto 1,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1  (predict for XP_003531071.1)
Subcellular
localization
TargetP
mito 3,  other 3  (predict for XP_003531071.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100799459

.
gma-r.7
for
100799459

.
gma-u.5
for
100778329

.
mtr-u.5
for
25493349

.
ppo-u.5
for
7493896

.
ppo-u.5
for
7491082

.
ath-u.5
for
POLD4

.
vvi-u.5
for
100263057

.
sly-u.5
for
101262116

.
sly-u.5
for
101255630

.
osa-u.5
for
4344737

.
osa-u.5
for
4347604

.
zma-u.5
for
100282638

.
zma-u.5
for
100280534

.


Ortholog ID: 3740
Species ath gma gma sly sly osa zma zma bra vvi ppo ppo mtr hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol POLD4 LOC100778329 LOC100799459 LOC101262116 LOC101255630 LOC4344737 LOC100282638 LOC100280534 LOC103871760 LOC100263057 LOC7493896 LOC7491082 LOC25493349 LOC123416082 LOC123396596 LOC107950350 LOC107937850 LOC106346242 LOC106401749 CHLRE_06g292950v5 LOC8069649 LOC8054860 LOC102606360 LOC102605871 LOC102608934 LOC100827592 LOC100836085 LOC107781395 LOC107810329
Function* polymerase delta 4 DNA polymerase delta subunit 4 DNA polymerase delta subunit 4 uncharacterized LOC101262116 uncharacterized LOC101255630 uncharacterized LOC4344737 polymerase delta 4 delta DNA polymerase uncharacterized LOC103871760 uncharacterized LOC100263057 DNA polymerase delta subunit 4 uncharacterized LOC7491082 DNA polymerase delta subunit 4 uncharacterized LOC123416082 uncharacterized LOC123396596 uncharacterized LOC107950350 DNA polymerase delta subunit 4 uncharacterized LOC106346242 uncharacterized LOC106401749 uncharacterized protein uncharacterized LOC8069649 DNA polymerase delta subunit 4 uncharacterized LOC102606360 DNA polymerase delta subunit 4-like uncharacterized LOC102608934 DNA polymerase delta subunit 4 uncharacterized LOC100836085 uncharacterized LOC107781395 uncharacterized LOC107810329
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 5
ath00240 Pyrimidine metabolism 2
ath01232 Nucleotide metabolism 2
ath03030 DNA replication 2
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03082 ATP-dependent chromatin remodeling 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma03010 Ribosome 3
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 4
sly04120 Ubiquitin mediated proteolysis 2
sly03040 Spliceosome 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 6
bra03008 Ribosome biogenesis in eukaryotes 3
bra03013 Nucleocytoplasmic transport 3
bra03040 Spliceosome 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03010 Ribosome 3
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo03030 DNA replication 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 3
ghi03410 Base excision repair 3
ghi03420 Nucleotide excision repair 3
ghi03430 Mismatch repair 3
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
sbi03015 mRNA surveillance pathway 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 7
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03410 Base excision repair 3
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
cit03420 Nucleotide excision repair 2
cit03018 RNA degradation 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 4
nta03060 Protein export 2
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837513 100778329 100799459 101262116 101255630 4344737 100282638 100280534 103871760 100263057 7493896 7491082 25493349 123416082 123396596 107950350 107937850 106346242 106401749 5727144 8069649 8054860 102606360 102605871 102608934 100827592 100836085 107781395 107810329
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