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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100799655   blue-light photoreceptor PHR2-like 
 gma-r.7   100799655   blue-light photoreceptor PHR2-like 
 gma-u.5   100788050   blue-light photoreceptor PHR2 
 gma-u.5   100777029   blue-light photoreceptor PHR2 
 mtr-u.5   11416819   blue-light photoreceptor PHR2 
 ppo-u.5   7478844   blue-light photoreceptor PHR2 
 ppo-u.5   18105287   blue-light photoreceptor PHR2-like 
 ath-u.5   PHR2   photolyase/blue-light receptor 2 
 vvi-u.5   100253809   blue-light photoreceptor PHR2 
 sly-u.5   101245200   cryptochrome DASH family protein 
 osa-u.5   4332801   blue-light photoreceptor PHR2 
 zma-u.5   103639157   blue-light photoreceptor PHR2 
 zma-u.5   100192113   photolyase/blue-light receptor PHR2 

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Top 50 coexpressed genes to 100799655 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100799655 (gma-u.5 coexpression data)

CoexMap"100799655"


gmaLOC100799655 | Entrez gene ID : 100799655    
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000719 [list] [network] photoreactive repair  (5 genes)  IEA  
GO CC
GO MF
GO:0003904 [list] [network] deoxyribodipyrimidine photo-lyase activity  (13 genes)  IEA  
GO:0071949 [list] [network] FAD binding  (123 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (3517 genes)  IEA  
Protein XP_003518065.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1  (predict for XP_003518065.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_003518065.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100799655

.
gma-r.7
for
100799655

.
gma-u.5
for
100788050

.
gma-u.5
for
100777029

.
mtr-u.5
for
11416819

.
ppo-u.5
for
7478844

.
ppo-u.5
for
18105287

.
ath-u.5
for
PHR2

.
vvi-u.5
for
100253809

.
sly-u.5
for
101245200

.
osa-u.5
for
4332801

.
zma-u.5
for
103639157

.
zma-u.5
for
100192113

.


Ortholog ID: 8434
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PHR2 LOC100777029 LOC100788050 LOC101245200 LOC4332801 LOC100192113 LOC103639157 LOC103866361 LOC100253809 LOC7478844 LOC18105287 LOC11416819 LOC123156831 LOC123147890 LOC123408732 LOC107923973 LOC107912369 LOC106450444 LOC125585472 CHLRE_12g534550v5 LOC8083647 LOC102601320 LOC102607951 LOC100843902 LOC107769279 LOC107760080
Function* photolyase/blue-light receptor 2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2 cryptochrome DASH family protein blue-light photoreceptor PHR2 photolyase/blue-light receptor PHR2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2-like blue-light photoreceptor PHR2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2-like blue-light photoreceptor PHR2 uncharacterized protein blue-light photoreceptor PHR2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2 blue-light photoreceptor PHR2-like blue-light photoreceptor PHR2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 2
ath00500 Starch and sucrose metabolism 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
gma00030 Pentose phosphate pathway 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly01230 Biosynthesis of amino acids 5
sly00290 Valine, leucine and isoleucine biosynthesis 2
sly00660 C5-Branched dibasic acid metabolism 2
sly01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 7
osa01200 Carbon metabolism 6
osa00710 Carbon fixation by Calvin cycle 4
osa01240 Biosynthesis of cofactors 4
osa00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 4
zma00860 Porphyrin metabolism 2
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 8
bra00630 Glyoxylate and dicarboxylate metabolism 4
bra00010 Glycolysis / Gluconeogenesis 4
bra00710 Carbon fixation by Calvin cycle 4
bra01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
vvi00860 Porphyrin metabolism 3
vvi01240 Biosynthesis of cofactors 3
vvi01230 Biosynthesis of amino acids 3
vvi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 8
ppo01230 Biosynthesis of amino acids 7
ppo00710 Carbon fixation by Calvin cycle 6
ppo00030 Pentose phosphate pathway 4
ppo00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 7
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
ppo01200 Carbon metabolism 4
ppo00010 Glycolysis / Gluconeogenesis 3
ppo00020 Citrate cycle (TCA cycle) 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 6
mtr01200 Carbon metabolism 4
mtr00270 Cysteine and methionine metabolism 4
mtr00710 Carbon fixation by Calvin cycle 3
mtr00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 11
tae01240 Biosynthesis of cofactors 6
tae00260 Glycine, serine and threonine metabolism 6
tae00270 Cysteine and methionine metabolism 6
tae01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 13
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 10
bna03040 Spliceosome 3
bna04141 Protein processing in endoplasmic reticulum 3
bna04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 5
sbi01240 Biosynthesis of cofactors 4
sbi01230 Biosynthesis of amino acids 3
sbi00360 Phenylalanine metabolism 3
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 9
sot00620 Pyruvate metabolism 8
sot01210 2-Oxocarboxylic acid metabolism 6
sot00061 Fatty acid biosynthesis 6
sot01212 Fatty acid metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit00260 Glycine, serine and threonine metabolism 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit00670 One carbon pool by folate 2
cit00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 4
bdi03010 Ribosome 4
bdi00562 Inositol phosphate metabolism 2
bdi01230 Biosynthesis of amino acids 2
bdi00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 7
nta00030 Pentose phosphate pathway 5
nta00710 Carbon fixation by Calvin cycle 5
nta01200 Carbon metabolism 5
nta00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 4
nta00030 Pentose phosphate pathway 3
nta00710 Carbon fixation by Calvin cycle 3
nta01200 Carbon metabolism 3
nta00010 Glycolysis / Gluconeogenesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819372 100777029 100788050 101245200 4332801 100192113 103639157 103866361 100253809 7478844 18105287 11416819 123156831 123147890 123408732 107923973 107912369 106450444 125585472 5718514 8083647 102601320 102607951 100843902 107769279 107760080
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