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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100306033   DNA-directed RNA polymerase II subunit family protein 
 mtr-u.5   25489110   DNA-directed RNA polymerase V subunit 5A 
 mtr-u.5   11419143   DNA-directed RNA polymerase V subunit 5A 
 mtr-u.5   120579378   DNA-directed RNA polymerases IV and V subunit 5B 
 ppo-u.5   7458931   DNA-directed RNA polymerase V subunit 5A 
 ath-u.5   RPB5D   RNA polymerase II fifth largest subunit, D 
 ath-u.5   NRPE5   Eukaryotic rpb5 RNA polymerase subunit family protein 
 vvi-u.5   100258335   DNA-directed RNA polymerase V subunit 5C 
 vvi-u.5   100853213   DNA-directed RNA polymerase V subunit 5A 
 sly-u.5   101252227   DNA-directed RNA polymerase V subunit 5A-like 
 sly-u.5   101255881   DNA-directed RNA polymerase V subunit 5A 
 osa-u.5   4351463   DNA-directed RNA polymerase V subunit 5A 
 osa-u.5   4349748   DNA-directed RNA polymerase V subunit 5A 
 zma-u.5   100273995   uncharacterized LOC100273995 

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Top 50 coexpressed genes to 100306033 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100306033 (gma-u.5 coexpression data)

CoexMap"100799908"


gmaLOC100799908 | Entrez gene ID : 100799908      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 1 3 1 2 2 2 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03020 [list] [network] RNA polymerase (81 genes)
gmx03420 [list] [network] Nucleotide excision repair (129 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (402 genes)  IEA  
GO CC
GO MF
GO:0003677 [list] [network] DNA binding  (3517 genes)  IEA  
Protein XP_003539245.2 [sequence] [blastp]
Subcellular
localization
wolf
extr 2,  E.R. 2,  cyto 1,  mito 1,  vacu 1,  E.R._plas 1  (predict for XP_003539245.2)
Subcellular
localization
TargetP
scret 8  (predict for XP_003539245.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100306033

.
mtr-u.5
for
25489110

.
mtr-u.5
for
11419143

.
mtr-u.5
for
120579378

.
ppo-u.5
for
7458931

.
ath-u.5
for
RPB5D

.
ath-u.5
for
NRPE5

.
vvi-u.5
for
100258335

.
vvi-u.5
for
100853213

.
sly-u.5
for
101252227

.
sly-u.5
for
101255881

.
osa-u.5
for
4351463

.
osa-u.5
for
4349748

.
zma-u.5
for
100273995

.


Ortholog ID: 3672
Species ath sly sly osa osa zma bra vvi vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sot sot cit cit bdi nta nta
Symbol NRPE5 LOC101252227 LOC101255881 LOC4349748 LOC4351463 LOC100273995 LOC103841615 LOC100258335 LOC100853213 LOC7458931 LOC11419143 LOC120579378 LOC123096606 LOC123086370 LOC123399999 LOC123448180 LOC107891355 LOC107889380 LOC106368028 LOC106412073 LOC8085637 LOC102596627 LOC102585816 LOC102612864 LOC102611161 LOC100836489 LOC107804980 LOC107775202
Function* Eukaryotic rpb5 RNA polymerase subunit family protein DNA-directed RNA polymerase V subunit 5A-like DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A uncharacterized LOC100273995 DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5C DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerases IV and V subunit 5B DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerases IV and V subunit 5B-like DNA-directed RNA polymerase V subunit 5A-like DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A-like DNA-directed RNA polymerase V subunit 5C DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A-like DNA-directed RNA polymerase V subunit 5A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 4
sly04120 Ubiquitin mediated proteolysis 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03040 Spliceosome 2
osa03020 RNA polymerase 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00780 Biotin metabolism 3
bra01240 Biosynthesis of cofactors 3
bra00061 Fatty acid biosynthesis 3
bra01212 Fatty acid metabolism 3
bra00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00561 Glycerolipid metabolism 2
vvi00564 Glycerophospholipid metabolism 2
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 9
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03013 Nucleocytoplasmic transport 4
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 4
tae03020 RNA polymerase 3
tae03010 Ribosome 3
tae03040 Spliceosome 2
tae00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 4
tae03020 RNA polymerase 3
tae00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi03082 ATP-dependent chromatin remodeling 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi03082 ATP-dependent chromatin remodeling 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00061 Fatty acid biosynthesis 8
bna01212 Fatty acid metabolism 8
bna00620 Pyruvate metabolism 7
bna01200 Carbon metabolism 7
bna00640 Propanoate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00061 Fatty acid biosynthesis 8
bna01212 Fatty acid metabolism 8
bna00620 Pyruvate metabolism 7
bna01200 Carbon metabolism 7
bna00640 Propanoate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 5
sot03420 Nucleotide excision repair 5
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04814 Motor proteins 2
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03013 Nucleocytoplasmic transport 2
bdi00261 Monobactam biosynthesis 2
bdi00300 Lysine biosynthesis 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 4
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03430 Mismatch repair 2
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 4
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03430 Mismatch repair 2
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824875 101252227 101255881 4349748 4351463 100273995 103841615 100258335 100853213 7458931 11419143 120579378 123096606 123086370 123399999 123448180 107891355 107889380 106368028 106412073 8085637 102596627 102585816 102612864 102611161 100836489 107804980 107775202
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