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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100800061   transcription initiation factor IIB-2 
 gma-r.7   100800061   transcription initiation factor IIB-2 
 gma-u.5   TFIIB1   transcription factor TFIIB 
 gma-u.5   100784014   transcription initiation factor IIB 
 gma-u.5   100790355   transcription initiation factor IIB 
 mtr-u.5   11411517   transcription initiation factor IIB-2 
 mtr-u.5   25488804   transcription initiation factor IIB-2 
 ppo-u.5   7484022   transcription initiation factor IIB-2 
 ath-u.5   TFIIB   transcription factor IIB 
 ath-u.5   AT3G10330   Cyclin-like family protein 
 bra-r.6   103866568   transcription initiation factor IIB-1 
 bra-r.6   103859340   transcription initiation factor IIB-2 
 bra-r.6   103857988   transcription initiation factor IIB-1 
 vvi-u.5   100267614   transcription initiation factor IIB-2 
 vvi-u.5   100266630   transcription initiation factor IIB-2 
 vvi-u.5   100248187   transcription initiation factor IIB 
 ghi-r.1   107922540   transcription initiation factor IIB-2 
 ghi-r.1   107918152   transcription initiation factor IIB-2 
 ghi-r.1   107891319   transcription initiation factor IIB-2 
 bna-r.1   106352803   transcription initiation factor IIB-1 
 bna-r.1   106437982   transcription initiation factor IIB-1 
 bna-r.1   106389092   transcription initiation factor IIB-2 
 cit-r.1   127901004   uncharacterized LOC127901004 
 cit-r.1   102625162   transcription initiation factor IIB-like 
 cit-r.1   102629446   transcription initiation factor IIB-2 
 sly-u.5   101266576   transcription initiation factor IIB-2 
 sly-u.5   101252540   transcription initiation factor IIB-2 
 sly-u.5   101246877   transcription initiation factor IIB-2 
 sot-r.1   102583751   transcription initiation factor IIB-2-like 
 sot-r.1   102593687   transcription initiation factor IIB-2 
 sot-r.1   102594013   transcription initiation factor IIB-2-like 
 nta-r.1   107777807   transcription initiation factor IIB-2 
 nta-r.1   107814464   transcription initiation factor IIB-2 
 nta-r.1   107821873   transcription initiation factor IIB-2 
 osa-u.5   4347689   transcription initiation factor IIB-like 
 zma-u.5   100193219   uncharacterized LOC100193219 
 sbi-r.1   8063057   transcription initiation factor IIB 
 bdi-r.1   100828741   transcription initiation factor IIB 
 cre-r.1   CHLRE_06g310450v5   uncharacterized protein 

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Top 50 coexpressed genes to 100800061 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100800061 (gma-u.5 coexpression data)

CoexMap"100800061"


gmaLOC100800061 | Entrez gene ID : 100800061      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma sbi bdi cre hvu tae
Paralog 5 2 1 2 3 3 3 3 3 3 3 3 1 1 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03022 [list] [network] Basal transcription factors (90 genes)
GO BP
GO:0070897 [list] [network] transcription preinitiation complex assembly  (37 genes)  IEA  
GO:0006352 [list] [network] DNA-templated transcription initiation  (123 genes)  IEA  
GO CC
GO:0097550 [list] [network] transcription preinitiation complex  (15 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0017025 [list] [network] TBP-class protein binding  (21 genes)  IEA  
Protein XP_003521166.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  cyto 1,  extr 1,  pero 1,  cyto_pero 1  (predict for XP_003521166.1)
Subcellular
localization
TargetP
other 8  (predict for XP_003521166.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100800061
gma-r.7
for
100800061
gma-u.5
for
TFIIB1
gma-u.5
for
100784014
gma-u.5
for
100790355
mtr-u.5
for
11411517
mtr-u.5
for
25488804
ppo-u.5
for
7484022
ath-u.5
for
TFIIB
ath-u.5
for
AT3G10330
bra-r.6
for
103866568
bra-r.6
for
103859340
bra-r.6
for
103857988
vvi-u.5
for
100267614
vvi-u.5
for
100266630
vvi-u.5
for
100248187
ghi-r.1
for
107922540
ghi-r.1
for
107918152
ghi-r.1
for
107891319
bna-r.1
for
106352803
bna-r.1
for
106437982
bna-r.1
for
106389092
cit-r.1
for
127901004
cit-r.1
for
102625162
cit-r.1
for
102629446
sly-u.5
for
101266576
sly-u.5
for
101252540
sly-u.5
for
101246877
sot-r.1
for
102583751
sot-r.1
for
102593687
sot-r.1
for
102594013
nta-r.1
for
107777807
nta-r.1
for
107814464
nta-r.1
for
107821873
osa-u.5
for
4347689
zma-u.5
for
100193219
sbi-r.1
for
8063057
bdi-r.1
for
100828741
cre-r.1
for
CHLRE_06g310450v5


Ortholog ID: 1305
Species gma gma gma mtr mtr ppo ath ath bra bra bra vvi vvi vvi ghi ghi ghi bna bna bna cit cit cit sly sly sly sot sot sot nta nta nta osa zma zma tae hvu sbi bdi cre
Symbol LOC100800061 LOC100784014 LOC100790355 LOC11411517 LOC25488804 LOC7484022 TFIIB AT3G10330 LOC103866568 LOC103859340 LOC103857988 LOC100267614 LOC100266630 LOC100248187 LOC107922540 LOC107918152 LOC107889411 LOC106437982 LOC106439245 LOC125585421 LOC127901004 LOC102625162 LOC102629446 LOC101266576 LOC101252540 LOC101246877 LOC102583751 LOC102593687 LOC102594013 LOC107777807 LOC107827741 LOC107777806 LOC4347689 LOC100193219 LOC103645624 LOC123104566 LOC123400110 LOC8063057 LOC100828741 CHLRE_06g310450v5
Function* transcription initiation factor IIB-2 transcription initiation factor IIB transcription initiation factor IIB transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription factor IIB Cyclin-like family protein transcription initiation factor IIB-1 transcription initiation factor IIB-2 transcription initiation factor IIB-1 transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB-1 transcription initiation factor IIB-2 transcription initiation factor IIB-1-like uncharacterized LOC127901004 transcription initiation factor IIB-like transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB-2-like transcription initiation factor IIB-2 transcription initiation factor IIB-2-like transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB-like uncharacterized LOC100193219 transcription initiation factor IIB transcription initiation factor IIB transcription initiation factor IIB transcription initiation factor IIB transcription initiation factor IIB uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma03040 Spliceosome 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 4
mtr03050 Proteasome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 4
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 6
ath03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00520 Amino sugar and nucleotide sugar metabolism 4
bra00010 Glycolysis / Gluconeogenesis 3
bra00051 Fructose and mannose metabolism 3
bra00052 Galactose metabolism 3
bra00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03022 Basal transcription factors 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00564 Glycerophospholipid metabolism 2
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03060 Protein export 4
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 4
nta00564 Glycerophospholipid metabolism 2
nta04146 Peroxisome 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 2
zma04070 Phosphatidylinositol signaling system 2
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00240 Pyrimidine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
bdi00190 Oxidative phosphorylation 2
bdi04142 Lysosome 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100800061 100784014 100790355 11411517 25488804 7484022 818761 820195 103866568 103859340 103857988 100267614 100266630 100248187 107922540 107918152 107889411 106437982 106439245 125585421 127901004 102625162 102629446 101266576 101252540 101246877 102583751 102593687 102594013 107777807 107827741 107777806 4347689 100193219 103645624 123104566 123400110 8063057 100828741 5716799
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