ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100800107	floral homeotic protein AGAMOUS
gma-r.7	100800107	floral homeotic protein AGAMOUS
gma-u.5	AGL1L	agamous-like MADS-box protein AGL1-like
gma-u.5	100782733	agamous-like MADS-box protein MADS1
gma-u.5	AGL11	MADS domain transporter AGL11
ath-u.5	AG	K-box region and MADS-box transcription factor family protein
ath-u.5	STK	K-box region and MADS-box transcription factor family protein
vvi-u.5	AG	agamous
vvi-u.5	MADS5	MADS-box protein 5
vvi-u.5	MADS1	MAD-box transcripion factor
sly-u.5	AG1	floral homeotic protein AGAMOUS
sly-u.5	MBP3	agamous-like MADS-box protein MBP3
osa-u.5	4324888	MADS-box transcription factor 21-like
osa-u.5	9271572	MADS-box transcription factor 3-like
zma-u.5	100037764	AGAMOUS-like protein
zma-u.5	542039	MADS-box transcription factor 21
zma-u.5	542244	homologue of Arabidopsis gene AGAMOUS

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(294 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(449 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(557 genes)	IEA
GO:0046983 [list] [network] protein dimerization activity	(899 genes)	IEA

Protein

XP_006580183.1 [sequence] [blastp]
XP_006580186.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_006580183.1)
nucl 9, pero 1, cysk 1	(predict for XP_006580186.1)

Subcellular
localization
TargetP

chlo 5, other 5	(predict for XP_006580183.1)
other 6	(predict for XP_006580186.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100800107	gma-r.7 for 100800107	gma-u.5 for AGL1L	gma-u.5 for 100782733	gma-u.5 for AGL11	ath-u.5 for AG	ath-u.5 for STK	vvi-u.5 for AG	vvi-u.5 for MADS5	vvi-u.5 for MADS1	sly-u.5 for AG1	sly-u.5 for MBP3	osa-u.5 for 4324888	osa-u.5 for 9271572	zma-u.5 for 100037764	zma-u.5 for 542039	zma-u.5 for 542244

Ortholog

Ortholog ID: 775

Species

gma

ath

bra

vvi

ghi

bna

cit

sly

osa

zma

tae

sbi

bdi

Symbol

SHP1

MADS1

MBP3

AG1

Function^*

agamous-like MADS-box protein MADS1

floral homeotic protein AGAMOUS-like

K-box region and MADS-box transcription factor family protein

floral homeotic protein AGAMOUS

agamous-like MADS-box protein AGL5

agamous

MAD-box transcripion factor

agamous-like MADS-box protein AGL11

agamous-like MADS-box protein MADS1

agamous-like MADS-box protein AGL1

agamous-like MADS-box protein AGL11

agamous-like MADS-box protein MBP3

floral homeotic protein AGAMOUS

MADS-box transcription factor 3-like

MADS-box transcription factor 21-like

homologue of Arabidopsis gene AGAMOUS

Agamous-like MADS-box protein AGL5

MADS-box transcription factor 21

MADS-box transcription factor 3

MADS-box transcription factor 3-like

MADS-box transcription factor 58-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00280	Valine, leucine and isoleucine degradation	2
ghi00640	Propanoate metabolism	2
ghi00785	Lipoic acid metabolism	2
ghi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00941	Flavonoid biosynthesis	3
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	2
sly00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00062	Fatty acid elongation	2
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2
zma00010	Glycolysis / Gluconeogenesis	2
zma00053	Ascorbate and aldarate metabolism	2
zma00071	Fatty acid degradation	2
zma00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00195	Photosynthesis	3

Expression

Expression pattern

Entrez Gene ID^*

100808734

100776263

825047

103861026

103866661

100261787

100232864

107914052

107959674

106353173

106428192

102620453

101249093

543840

9271572

4324888

542244

542037

100136964

100136965

8080509

110430121

100824190

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100800107 (gma-u.5 coexpression data)

Top 50 enrichment test to 100800107 (gma-u.5 coexpression data)


Species	gma	ath	vvi	sly	osa	zma	bdi	mtr	bra	hvu	cit	bna	ppo	sbi	ghi	sot	nta	cre	tae
Paralog	5	2	3	2	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100800107 (gma-u.5 coexpression data)

Top 50 enrichment test to 100800107 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**