ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	HGO1	homogentisate 1,2-dioxygenase
gma-r.7	HGO1	homogentisate 1,2-dioxygenase
gma-m.5	HGO1	homogentisate 1,2-dioxygenase
gma-u.5	HGO2	homogentisate 1,2-dioxygenase
mtr-u.5	25502511	homogentisate 1,2-dioxygenase
ppo-u.5	7485142	homogentisate 1,2-dioxygenase
ath-u.5	HGO	homogentisate 1,2-dioxygenase
vvi-u.5	100264043	homogentisate 1,2-dioxygenase
sly-u.5	543605	homogentisate 1,2-dioxygenase
osa-u.5	4339844	homogentisate 1,2-dioxygenase-like
zma-u.5	100192757	uncharacterized LOC100192757

functional annotation

KEGG

gmx00350 [list] [network] Tyrosine metabolism (82 genes)

GO BP

GO:0006559 [list] [network] L-phenylalanine catabolic process	(15 genes)	IEA
GO:0006570 [list] [network] tyrosine metabolic process	(15 genes)	IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(9233 genes)

IEA

GO MF

GO:0004411 [list] [network] homogentisate 1,2-dioxygenase activity

(2 genes)

IEA

Protein

XP_006592560.1 [sequence] [blastp]
XP_040863058.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 2, nucl_plas 2, pero 1	(predict for XP_006592560.1)
nucl 4, cyto 2, nucl_plas 2, pero 1	(predict for XP_040863058.1)

Subcellular
localization
TargetP

other 8	(predict for XP_006592560.1)
other 8	(predict for XP_040863058.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for HGO1	gma-r.7 for HGO1	gma-m.5 for HGO1	gma-u.5 for HGO2	mtr-u.5 for 25502511	ppo-u.5 for 7485142	ath-u.5 for HGO	vvi-u.5 for 100264043	sly-u.5 for 543605	osa-u.5 for 4339844	zma-u.5 for 100192757

Ortholog ID: 10394

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

HGO1

HGO2

HGO

Function^*

homogentisate 1,2-dioxygenase

homogentisate 1,2-dioxygenase-like

homogentisate 1,2-dioxygenase

homogentisate 1,2-dioxygenase-like

uncharacterized LOC100192757

homogentisate 1,2-dioxygenase

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00860	Porphyrin metabolism	3
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00280	Valine, leucine and isoleucine degradation	5
mtr01240	Biosynthesis of cofactors	3
mtr00350	Tyrosine metabolism	3
mtr01210	2-Oxocarboxylic acid metabolism	2
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00280	Valine, leucine and isoleucine degradation	4
ppo04148	Efferocytosis	2
ppo00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00280	Valine, leucine and isoleucine degradation	8
ath01210	2-Oxocarboxylic acid metabolism	4
ath00640	Propanoate metabolism	3
ath01230	Biosynthesis of amino acids	3
ath00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04146	Peroxisome	2
bra00260	Glycine, serine and threonine metabolism	2
bra00280	Valine, leucine and isoleucine degradation	2
bra00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00640	Propanoate metabolism	6
ghi00071	Fatty acid degradation	5
ghi01212	Fatty acid metabolism	5
ghi04146	Peroxisome	5
ghi00280	Valine, leucine and isoleucine degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00071	Fatty acid degradation	5
ghi01212	Fatty acid metabolism	5
ghi04146	Peroxisome	5
ghi00640	Propanoate metabolism	4
ghi00061	Fatty acid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00280	Valine, leucine and isoleucine degradation	11
bna00310	Lysine degradation	7
bna00640	Propanoate metabolism	4
bna00785	Lipoic acid metabolism	4
bna01210	2-Oxocarboxylic acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00310	Lysine degradation	8
bna00280	Valine, leucine and isoleucine degradation	6
bna00630	Glyoxylate and dicarboxylate metabolism	4
bna01200	Carbon metabolism	4
bna00071	Fatty acid degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00280	Valine, leucine and isoleucine degradation	3
sly00310	Lysine degradation	2
sly00350	Tyrosine metabolism	2
sly00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00280	Valine, leucine and isoleucine degradation	5
sot00310	Lysine degradation	2
sot00640	Propanoate metabolism	2
sot01200	Carbon metabolism	2
sot01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00280	Valine, leucine and isoleucine degradation	10
nta00270	Cysteine and methionine metabolism	4
nta01210	2-Oxocarboxylic acid metabolism	4
nta00310	Lysine degradation	4
nta00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00280	Valine, leucine and isoleucine degradation	8
nta00260	Glycine, serine and threonine metabolism	4
nta00310	Lysine degradation	4
nta00052	Galactose metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00280	Valine, leucine and isoleucine degradation	4
osa00071	Fatty acid degradation	4
osa01212	Fatty acid metabolism	3
osa00350	Tyrosine metabolism	2
osa00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00561	Glycerolipid metabolism	2
zma00280	Valine, leucine and isoleucine degradation	2
zma04146	Peroxisome	2
zma04082	Neuroactive ligand signaling	2
zma00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00350	Tyrosine metabolism	5
tae04075	Plant hormone signal transduction	2
tae00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00280	Valine, leucine and isoleucine degradation	6
tae04075	Plant hormone signal transduction	3
tae00350	Tyrosine metabolism	3
tae01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00280	Valine, leucine and isoleucine degradation	9
hvu00330	Arginine and proline metabolism	3
hvu00640	Propanoate metabolism	3
hvu00010	Glycolysis / Gluconeogenesis	2
hvu00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00280	Valine, leucine and isoleucine degradation	6
bdi00330	Arginine and proline metabolism	3
bdi01210	2-Oxocarboxylic acid metabolism	2
bdi01230	Biosynthesis of amino acids	2
bdi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00280	Valine, leucine and isoleucine degradation	3

Expression

Expression pattern

Entrez Gene ID^*

100801346

100779961

25502511

7485142

835494

103851993

100264043

107939200

107917989

106380944

106390253

102613255

543605

102579798

107770720

107764203

4339844

100192757

123088644

123164099

123407136

8066857

100823907

5727482

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to HGO1 (gma-u.5 coexpression data)

Top 50 enrichment test to HGO1 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to HGO1 (gma-u.5 coexpression data)

Top 50 enrichment test to HGO1 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**