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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100802433   general transcription factor IIE subunit 2 
 gma-r.7   100802433   general transcription factor IIE subunit 2 
 gma-m.5   100802433   general transcription factor IIE subunit 2 
 gma-u.5   100793998   general transcription factor IIE subunit 2 
 gma-u.5   100792075   transcription initiation factor IIE subunit beta 
 gma-u.5   100788089   transcription initiation factor IIE subunit beta-like 
 mtr-u.5   25502025   general transcription factor IIE subunit 2 
 mtr-u.5   11443092   transcription initiation factor IIE subunit beta 
 ppo-u.5   7478059   uncharacterized LOC7478059 
 ath-u.5   AT4G20330   Transcription initiation factor TFIIE, beta subunit 
 vvi-u.5   100261481   uncharacterized LOC100261481 
 vvi-u.5   100259920   uncharacterized LOC100259920 
 sly-u.5   101250226   uncharacterized LOC101250226 
 osa-u.5   4348554   uncharacterized LOC4348554 
 zma-u.5   100192795   uncharacterized LOC100192795 

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Top 50 coexpressed genes to 100802433 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100802433 (gma-u.5 coexpression data)

CoexMap"100802433"


gmaLOC100802433 | Entrez gene ID : 100802433      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03022 [list] [network] Basal transcription factors (90 genes)
GO BP
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (62 genes)  IEA  
GO CC
GO:0005673 [list] [network] transcription factor TFIIE complex  (8 genes)  IEA  
GO MF
GO:0001097 [list] [network] TFIIH-class transcription factor complex binding  (4 genes)  IEA  
Protein XP_003525408.1 [sequence] [blastp]
XP_006580604.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  cyto_plas 3  (predict for XP_003525408.1)
cyto 5,  nucl 3,  cyto_plas 3  (predict for XP_006580604.1)
Subcellular
localization
TargetP
other 4,  chlo 4  (predict for XP_003525408.1)
other 4,  chlo 4  (predict for XP_006580604.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100802433

.
gma-r.7
for
100802433

.
gma-m.5
for
100802433

.
gma-u.5
for
100793998

.
gma-u.5
for
100792075

.
gma-u.5
for
100788089

.
mtr-u.5
for
25502025

.
mtr-u.5
for
11443092

.
ppo-u.5
for
7478059

.
ath-u.5
for
AT4G20330

.
vvi-u.5
for
100261481

.
vvi-u.5
for
100259920

.
sly-u.5
for
101250226

.
osa-u.5
for
4348554

.
zma-u.5
for
100192795

.


Ortholog ID: 3480
Species ath gma gma sly osa zma bra vvi vvi ppo mtr mtr tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol AT4G20330 LOC100792075 LOC100788089 LOC101250226 LOC4348554 LOC100192795 LOC103853535 LOC100259920 LOC100261481 LOC7478059 LOC25502025 LOC11443092 LOC123098635 LOC123402301 LOC107922749 LOC107926989 LOC106396961 LOC106401615 CHLRE_12g512700v5 LOC8082027 LOC8072318 LOC102599084 LOC102622567 LOC100841072 LOC107807528 LOC107831153
Function* Transcription initiation factor TFIIE, beta subunit transcription initiation factor IIE subunit beta transcription initiation factor IIE subunit beta-like uncharacterized LOC101250226 uncharacterized LOC4348554 uncharacterized LOC100192795 transcription initiation factor IIE subunit beta uncharacterized LOC100259920 uncharacterized LOC100261481 uncharacterized LOC7478059 general transcription factor IIE subunit 2 transcription initiation factor IIE subunit beta uncharacterized LOC123098635 uncharacterized LOC123402301 general transcription factor IIE subunit 2 general transcription factor IIE subunit 2 transcription initiation factor IIE subunit beta-like transcription initiation factor IIE subunit beta uncharacterized protein general transcription factor IIE subunit 2 uncharacterized LOC8072318 uncharacterized LOC102599084 uncharacterized LOC102622567 uncharacterized LOC100841072 uncharacterized LOC107807528 uncharacterized LOC107831153
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
ath03040 Spliceosome 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 3
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 5
zma03008 Ribosome biogenesis in eukaryotes 2
zma04712 Circadian rhythm - plant 2
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 3
vvi00190 Oxidative phosphorylation 2
vvi04142 Lysosome 2
vvi04145 Phagosome 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi01250 Biosynthesis of nucleotide sugars 2
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
mtr03022 Basal transcription factors 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae00020 Citrate cycle (TCA cycle) 3
tae00310 Lysine degradation 3
tae00380 Tryptophan metabolism 3
tae00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04145 Phagosome 6
bdi04144 Endocytosis 4
bdi04148 Efferocytosis 4
bdi04141 Protein processing in endoplasmic reticulum 3
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 3
nta04075 Plant hormone signal transduction 3
nta04626 Plant-pathogen interaction 3
nta03022 Basal transcription factors 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 3
nta04075 Plant hormone signal transduction 3
nta04626 Plant-pathogen interaction 3
nta03008 Ribosome biogenesis in eukaryotes 2
nta03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827781 100792075 100788089 101250226 4348554 100192795 103853535 100259920 100261481 7478059 25502025 11443092 123098635 123402301 107922749 107926989 106396961 106401615 5716609 8082027 8072318 102599084 102622567 100841072 107807528 107831153
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