ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100805179	rhomboid-like protein 19
gma-r.7	100805179	rhomboid-like protein 19
gma-m.5	100805179	rhomboid-like protein 19
gma-u.5	100777370	rhomboid-like protein 19
gma-u.5	100799282	rhomboid-like protein 19
mtr-u.5	11427992	rhomboid-like protein 19
ppo-u.5	7479886	rhomboid-like protein 19
ppo-u.5	7468410	rhomboid-like protein 19
ath-u.5	AT3G07950	rhomboid protein-like protein
vvi-u.5	100258140	rhomboid-like protein 19
sly-u.5	101259931	rhomboid-like protein 19
osa-u.5	4344140	rhomboid-like protein 19
osa-u.5	4334896	rhomboid-like protein 19
zma-u.5	100283447	uncharacterized LOC100283447
zma-u.5	100272463	Rhomboid-like protein 19
zma-u.5	100216993	Rhomboid-like protein 19

Annotation

functional annotation

KEGG

GO BP

GO:0006890 [list] [network] retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum

(59 genes)

IEA

GO CC

GO:0005794 [list] [network] Golgi apparatus	(934 genes)	IEA
GO:0016020 [list] [network] membrane	(5894 genes)	IEA

GO MF

Protein

XP_003535533.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 5, vacu 3, nucl_plas 3, E.R._plas 3

(predict for XP_003535533.1)

Subcellular
localization
TargetP

other 2

(predict for XP_003535533.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100805179	gma-r.7 for 100805179	gma-m.5 for 100805179	gma-u.5 for 100777370	gma-u.5 for 100799282	mtr-u.5 for 11427992	ppo-u.5 for 7479886	ppo-u.5 for 7468410	ath-u.5 for AT3G07950	vvi-u.5 for 100258140	sly-u.5 for 101259931	osa-u.5 for 4344140	osa-u.5 for 4334896	zma-u.5 for 100283447	zma-u.5 for 100272463	zma-u.5 for 100216993

Ortholog

Ortholog ID: 3571

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

rhomboid-like protein 19

rhomboid protein-like protein

rhomboid-like protein 19

uncharacterized LOC100192037

uncharacterized LOC100194098

rhomboid-like protein 19

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03060	Protein export	2
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03060	Protein export	2
mtr00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	6
ppo04142	Lysosome	5
ppo04145	Phagosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra04141	Protein processing in endoplasmic reticulum	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	3
vvi00785	Lipoic acid metabolism	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	4
ghi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	4
ghi03015	mRNA surveillance pathway	2
ghi04382	Cornified envelope formation	2
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	4
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	4
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit00510	N-Glycan biosynthesis	3
cit00513	Various types of N-glycan biosynthesis	3
cit04626	Plant-pathogen interaction	3
cit04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	4
nta00440	Phosphonate and phosphinate metabolism	2
nta00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	4
osa01250	Biosynthesis of nucleotide sugars	4
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00520	Amino sugar and nucleotide sugar metabolism	3
zma01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	3
tae03082	ATP-dependent chromatin remodeling	3
tae00510	N-Glycan biosynthesis	2
tae00513	Various types of N-glycan biosynthesis	2
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	5
tae00513	Various types of N-glycan biosynthesis	5
tae04141	Protein processing in endoplasmic reticulum	5
tae00310	Lysine degradation	3
tae03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	2
hvu01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	2
hvu00510	N-Glycan biosynthesis	2
hvu00513	Various types of N-glycan biosynthesis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	5
sbi00510	N-Glycan biosynthesis	3
sbi03082	ATP-dependent chromatin remodeling	2
sbi03083	Polycomb repressive complex	2
sbi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00520	Amino sugar and nucleotide sugar metabolism	3
sbi01250	Biosynthesis of nucleotide sugars	3
sbi00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01250	Biosynthesis of nucleotide sugars	3
bdi00520	Amino sugar and nucleotide sugar metabolism	2
bdi00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00514	Other types of O-glycan biosynthesis	3
cre00520	Amino sugar and nucleotide sugar metabolism	2
cre01250	Biosynthesis of nucleotide sugars	2

Expression

Expression pattern

Entrez Gene ID^*

100799282

100805179

11427992

7479886

7468410

819986

103870622

103848942

100258140

107913476

107904262

106427984

125599866

102630569

101259931

102600974

107808565

107791014

4334896

4344140

100192037

100194098

123051791

123043927

123424422

123424976

8072229

8056948

100836417

100823911

5717197

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100805179 (gma-u.5 coexpression data)

Top 50 enrichment test to 100805179 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	5	1	2	1	1	1	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100805179 (gma-u.5 coexpression data)

Top 50 enrichment test to 100805179 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**