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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100806134   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 gma-r.7   100806134   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 gma-m.5   100806134   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 gma-u.5   100802715   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 
 gma-u.5   100802937   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 gma-u.5   100803605   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 mtr-u.5   11410358   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 mtr-u.5   25493337   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 mtr-u.5   25484251   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 ppo-u.5   7471962   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 
 ppo-u.5   7487704   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 
 ppo-u.5   7474992   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 
 ath-u.5   LSH3   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 ath-u.5   LSH5   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 bra-r.6   103865960   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 bra-r.6   103866652   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 bra-r.6   103865110   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 
 vvi-u.5   104879291   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 vvi-u.5   100254926   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 vvi-u.5   100244642   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 ghi-r.1   107913592   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 ghi-r.1   107914954   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 ghi-r.1   107891312   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 bna-r.1   125575360   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6-like 
 bna-r.1   106409462   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9-like 
 bna-r.1   106417463   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 
 cit-r.1   102628291   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 cit-r.1   102627798   hypothetical protein 
 cit-r.1   102620640   hypothetical protein 
 sly-u.5   101261831   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like 
 sly-u.5   101263979   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 sly-u.5   TFAM1   TMF family protein 
 sot-r.1   102591189   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like 
 sot-r.1   102588665   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 
 sot-r.1   102583639   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like 
 nta-r.1   107794040   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like 
 nta-r.1   107794180   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 nta-r.1   107796872   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like 
 osa-u.5   4338491   protein G1-like9 
 osa-u.5   107278610   protein G1-like7 
 osa-u.5   107278201   protein G1-like8 
 zma-u.5   100274783   putative protein of unknown function (DUF640) domain family protein 
 zma-u.5   100276429   putative protein of unknown function (DUF640) domain family protein 
 zma-u.5   100381724   putative protein of unknown function (DUF640) domain family protein 
 tae-r.2   123052627   protein G1-like7 
 tae-r.2   123046119   protein G1-like4 
 hvu-r.1   123427243   protein G1-like4 
 sbi-r.1   8084680   protein G1-like6 
 sbi-r.1   8061327   protein G1-like7 
 bdi-r.1   100821276   protein G1-like4 
 bdi-r.1   100822544   protein G1-like1 

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Top 50 coexpressed genes to 100806134 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100806134 (gma-u.5 coexpression data)

CoexMap"100806134"


gmaLOC100806134 | Entrez gene ID : 100806134      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 6 3 3 2 3 3 3 3 3 3 3 3 3 3 2 1 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009299 [list] [network] mRNA transcription  (25 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (218 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
Protein XP_003539992.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_003539992.1)
Subcellular
localization
TargetP
other 7,  chlo 6  (predict for XP_003539992.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100806134
gma-r.7
for
100806134
gma-m.5
for
100806134
gma-u.5
for
100802715
gma-u.5
for
100802937
gma-u.5
for
100803605
mtr-u.5
for
11410358
mtr-u.5
for
25493337
mtr-u.5
for
25484251
ppo-u.5
for
7471962
ppo-u.5
for
7487704
ppo-u.5
for
7474992
ath-u.5
for
LSH3
ath-u.5
for
LSH5
bra-r.6
for
103865960
bra-r.6
for
103866652
bra-r.6
for
103865110
vvi-u.5
for
104879291
vvi-u.5
for
100254926
vvi-u.5
for
100244642
ghi-r.1
for
107913592
ghi-r.1
for
107914954
ghi-r.1
for
107891312
bna-r.1
for
125575360
bna-r.1
for
106409462
bna-r.1
for
106417463
cit-r.1
for
102628291
cit-r.1
for
102627798
cit-r.1
for
102620640
sly-u.5
for
101261831
sly-u.5
for
101263979
sly-u.5
for
TFAM1
sot-r.1
for
102591189
sot-r.1
for
102588665
sot-r.1
for
102583639
nta-r.1
for
107794040
nta-r.1
for
107794180
nta-r.1
for
107796872
osa-u.5
for
4338491
osa-u.5
for
107278610
osa-u.5
for
107278201
zma-u.5
for
100274783
zma-u.5
for
100276429
zma-u.5
for
100381724
tae-r.2
for
123052627
tae-r.2
for
123046119
hvu-r.1
for
123427243
sbi-r.1
for
8084680
sbi-r.1
for
8061327
bdi-r.1
for
100821276
bdi-r.1
for
100822544


Ortholog ID: 68
Species gma gma gma mtr mtr ppo ppo ppo ath ath bra bra bra vvi vvi vvi ghi ghi ghi bna bna bna cit cit cit sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi
Symbol LOC100803605 LOC100778283 LOC102663941 LOC11408401 LOC11407427 LOC7474992 LOC7460096 LOC7467540 LSH3 LSH6 LOC103865110 LOC103874577 LOC103828755 LOC100249172 LOC100260366 LOC100266079 LOC107905816 LOC107958534 LOC107936786 LOC106391304 LOC125599502 LOC125602819 LOC102610331 LOC102606613 LOC102612277 LOC101261831 LOC101244207 LOC101256738 LOC102583639 LOC102600485 LOC107058264 LOC107794180 LOC107760918 LOC107766017 LOC107278610 LOC4330024 LOC4336401 LOC100381724 LOC100304411 LOC100275232 LOC123181080 LOC123182342 LOC123427243 LOC123444893 LOC123402509 LOC8054276 LOC8076105 LOC8072493 LOC100821276 LOC100822544 LOC100826147
Function* protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6-like hypothetical protein protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein G1-like7 protein G1-like3 protein G1-like4 putative protein of unknown function (DUF640) domain family protein putative protein of unknown function (DUF640) domain family protein putative protein of unknown function (DUF640) domain family protein protein G1-like5 protein G1-like7 protein G1-like4 protein G1-like8 protein G1-like3 protein G1-like4 protein G1-like1 protein G1-like4 protein G1-like4 protein G1-like1 protein G1-like5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 6
ath04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 3
vvi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
vvi00941 Flavonoid biosynthesis 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03083 Polycomb repressive complex 2
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
cit03040 Spliceosome 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00061 Fatty acid biosynthesis 3
cit01040 Biosynthesis of unsaturated fatty acids 3
cit01212 Fatty acid metabolism 3
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00730 Thiamine metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00270 Cysteine and methionine metabolism 3
sot00920 Sulfur metabolism 3
sot01200 Carbon metabolism 3
sot01230 Biosynthesis of amino acids 3
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100803605 100778283 102663941 11408401 11407427 7474992 7460096 7467540 817672 837220 103865110 103874577 103828755 100249172 100260366 100266079 107905816 107958534 107936786 106391304 125599502 125602819 102610331 102606613 102612277 101261831 101244207 101256738 102583639 102600485 107058264 107794180 107760918 107766017 107278610 4330024 4336401 100381724 100304411 100275232 123181080 123182342 123427243 123444893 123402509 8054276 8076105 8072493 100821276 100822544 100826147
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