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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100806909   DNA-directed RNA polymerases II, IV and V subunit 8B 
 gma-r.7   100806909   DNA-directed RNA polymerases II, IV and V subunit 8B 
 gma-u.5   100499860   uncharacterized LOC100499860 
 gma-u.5   100780342   DNA-directed RNA polymerases II, IV and V subunit 8B 
 gma-u.5   100816388   DNA-directed RNA polymerases I, II, and III subunit RPABC3-like 
 mtr-u.5   11441441   DNA-directed RNA polymerases II and V subunit 8A 
 mtr-u.5   11442457   DNA-directed RNA polymerases II and V subunit 8A 
 mtr-u.5   25483690   DNA-directed RNA polymerases II, IV and V subunit 8B 
 ppo-u.5   7482406   tubulin-folding cofactor A 
 ppo-u.5   18104533   DNA-directed RNA polymerases II, IV and V subunit 8B 
 ath-u.5   NRPB8B   RNA polymerase Rpb8 
 ath-u.5   NRPB8A   RNA polymerase Rpb8 
 vvi-u.5   100249225   DNA-directed RNA polymerases II and V subunit 8A 
 vvi-u.5   100254322   DNA-directed RNA polymerases II and V subunit 8A 
 sly-u.5   101254169   DNA-directed RNA polymerases II and V subunit 8A 
 osa-u.5   4341946   DNA-directed RNA polymerases II, IV and V subunit 8B 
 osa-u.5   4334766   DNA-directed RNA polymerases II, IV and V subunit 8B 
 zma-u.5   100281008   uncharacterized LOC100281008 

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Top 50 coexpressed genes to 100806909 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100806909 (gma-u.5 coexpression data)

CoexMap"100806909"


gmaLOC100806909 | Entrez gene ID : 100806909    
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 3 2 2 2 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03020 [list] [network] RNA polymerase (81 genes)
gmx03420 [list] [network] Nucleotide excision repair (129 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (402 genes)  IEA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (27 genes)  IEA  
GO:0005665 [list] [network] RNA polymerase II, core complex  (38 genes)  IEA  
GO:0005666 [list] [network] RNA polymerase III complex  (45 genes)  IEA  
GO MF
Protein XP_003531419.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 3,  nucl 2,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_003531419.1)
Subcellular
localization
TargetP
other 9  (predict for XP_003531419.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100806909

.
gma-r.7
for
100806909

.
gma-u.5
for
100499860

.
gma-u.5
for
100780342

.
gma-u.5
for
100816388

.
mtr-u.5
for
11441441

.
mtr-u.5
for
11442457

.
mtr-u.5
for
25483690

.
ppo-u.5
for
7482406

.
ppo-u.5
for
18104533

.
ath-u.5
for
NRPB8B

.
ath-u.5
for
NRPB8A

.
vvi-u.5
for
100249225

.
vvi-u.5
for
100254322

.
sly-u.5
for
101254169

.
osa-u.5
for
4341946

.
osa-u.5
for
4334766

.
zma-u.5
for
100281008

.


Ortholog ID: 3594
Species ath ath gma gma sly osa osa zma bra vvi vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi bdi nta nta
Symbol NRPB8B NRPB8A LOC100816388 LOC100780342 LOC101254169 LOC4334766 LOC4341946 LOC100281008 LOC103841806 LOC100254322 LOC100249225 LOC7482406 LOC11442457 LOC11441441 LOC123051584 LOC123187520 LOC123424749 LOC121213756 LOC107941303 LOC111208524 LOC106368445 CHLRE_02g102800v5 LOC8080154 LOC102594913 LOC102590066 LOC102625354 LOC100842614 LOC100837358 LOC107771156 LOC107801754
Function* RNA polymerase Rpb8 RNA polymerase Rpb8 DNA-directed RNA polymerases I, II, and III subunit RPABC3-like DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II and V subunit 8A DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B uncharacterized LOC100281008 DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II and V subunit 8A DNA-directed RNA polymerases II and V subunit 8A tubulin-folding cofactor A DNA-directed RNA polymerases II and V subunit 8A DNA-directed RNA polymerases II and V subunit 8A DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B-like DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B uncharacterized protein DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B-like DNA-directed RNA polymerases II and V subunit 8A-like DNA-directed RNA polymerases II and V subunit 8A DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II, IV and V subunit 8B DNA-directed RNA polymerases II and V subunit 8A-like DNA-directed RNA polymerases II, IV and V subunit 8B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 5
ath03018 RNA degradation 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
ath03018 RNA degradation 2
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03420 Nucleotide excision repair 2
gma03020 RNA polymerase 2
gma03018 RNA degradation 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 3
sly03040 Spliceosome 3
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 12
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra04141 Protein processing in endoplasmic reticulum 2
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 11
vvi00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03420 Nucleotide excision repair 2
vvi03010 Ribosome 2
vvi03030 DNA replication 2
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 4
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr03420 Nucleotide excision repair 4
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00030 Pentose phosphate pathway 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi03020 RNA polymerase 3
ghi03420 Nucleotide excision repair 3
ghi04075 Plant hormone signal transduction 2
ghi00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi03020 RNA polymerase 3
ghi03420 Nucleotide excision repair 3
ghi00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna03018 RNA degradation 2
bna03040 Spliceosome 2
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna03040 Spliceosome 3
bna00260 Glycine, serine and threonine metabolism 3
bna00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 5
cre03420 Nucleotide excision repair 4
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
sbi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 3
sot03420 Nucleotide excision repair 3
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
cit03020 RNA polymerase 2
cit03420 Nucleotide excision repair 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03050 Proteasome 4
bdi03420 Nucleotide excision repair 3
bdi00020 Citrate cycle (TCA cycle) 2
bdi00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi03420 Nucleotide excision repair 4
bdi03020 RNA polymerase 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825129 841866 100816388 100780342 101254169 4334766 4341946 100281008 103841806 100254322 100249225 7482406 11442457 11441441 123051584 123187520 123424749 121213756 107941303 111208524 106368445 5725551 8080154 102594913 102590066 102625354 100842614 100837358 107771156 107801754
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