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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   CYP39   peptidyl-prolyl cis-trans isomerase CYP39 
 gma-r.7   CYP39   peptidyl-prolyl cis-trans isomerase CYP39 
 gma-u.5   CYP40   peptidyl-prolyl cis-trans isomerase CYP40 
 gma-u.5   CYP41   peptidyl-prolyl cis-trans isomerase CYP41 
 mtr-u.5   25492782   peptidyl-prolyl cis-trans isomerase CYP21-1 
 ppo-u.5   7472130   peptidyl-prolyl cis-trans isomerase CYP21-1 
 ppo-u.5   7453640   peptidyl-prolyl cis-trans isomerase CYP21-1 
 ath-u.5   AT4G34960   Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 
 vvi-u.5   100255625   peptidyl-prolyl cis-trans isomerase CYP21-1 
 sly-u.5   101262058   peptidyl-prolyl cis-trans isomerase CYP21-1 
 osa-u.5   4347707   peptidyl-prolyl cis-trans isomerase CYP21-1 
 zma-u.5   103645689   peptidyl-prolyl cis-trans isomerase CYP21-1 
 zma-u.5   100216820   putative peptidyl-prolyl cis-trans isomerase family protein 

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Top 50 coexpressed genes to CYP39 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CYP39 (gma-u.5 coexpression data)

CoexMap"100808240"


gmaCYP39 | Entrez gene ID : 100808240      
Species gma mtr ppo ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 4 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000413 [list] [network] protein peptidyl-prolyl isomerization  (66 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (10455 genes)  IEA  
GO MF
GO:0003755 [list] [network] peptidyl-prolyl cis-trans isomerase activity  (112 genes)  IEA  
Protein NP_001344103.1 [sequence] [blastp]
XP_006577899.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 1,  extr 1,  nucl 1,  mito 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001344103.1)
chlo 5,  cyto 1,  extr 1,  nucl 1,  mito 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_006577899.1)
Subcellular
localization
TargetP
scret 8  (predict for NP_001344103.1)
scret 8  (predict for XP_006577899.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
CYP39
gma-r.7
for
CYP39
gma-u.5
for
CYP40
gma-u.5
for
CYP41
mtr-u.5
for
25492782
ppo-u.5
for
7472130
ppo-u.5
for
7453640
ath-u.5
for
AT4G34960
vvi-u.5
for
100255625
sly-u.5
for
101262058
osa-u.5
for
4347707
zma-u.5
for
103645689
zma-u.5
for
100216820


Ortholog ID: 8112
Species gma gma mtr ppo ppo ath bra bra vvi ghi ghi bna bna cit sly sot nta nta osa zma zma tae tae hvu sbi bdi
Symbol CYP41 CYP40 LOC25492782 LOC7472130 LOC7453640 AT4G34960 LOC103834378 LOC103833231 LOC100255625 LOC107936944 LOC107928782 LOC106375282 LOC106434711 LOC102610001 LOC101262058 LOC102592507 LOC107815513 LOC107787161 LOC4347707 LOC100216820 LOC103645689 LOC123104603 LOC123112872 LOC123400153 LOC8070908 LOC100832088
Function* peptidyl-prolyl cis-trans isomerase CYP41 peptidyl-prolyl cis-trans isomerase CYP40 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1-like peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1-like peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 putative peptidyl-prolyl cis-trans isomerase family protein peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1 peptidyl-prolyl cis-trans isomerase CYP21-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 4
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
gma04136 Autophagy - other 2
gma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03040 Spliceosome 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr04141 Protein processing in endoplasmic reticulum 4
mtr03060 Protein export 2
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 3
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03030 DNA replication 2
bra03082 ATP-dependent chromatin remodeling 2
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 3
sly04070 Phosphatidylinositol signaling system 3
sly04075 Plant hormone signal transduction 3
sly04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00470 D-Amino acid metabolism 2
nta00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00470 D-Amino acid metabolism 2
nta00541 Biosynthesis of various nucleotide sugars 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 4
osa00510 N-Glycan biosynthesis 3
osa00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 3
bdi04145 Phagosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100800775 100808983 25492782 7472130 7453640 829648 103834378 103833231 100255625 107936944 107928782 106375282 106434711 102610001 101262058 102592507 107815513 107787161 4347707 100216820 103645689 123104603 123112872 123400153 8070908 100832088
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