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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   102661897   probable E3 ubiquitin-protein ligase XERICO 
 mtr-u.5   25485456   E3 ubiquitin-protein ligase RHA2A 
 ppo-u.5   18099148   RING-H2 finger protein ATL72 
 ppo-u.5   7475555   E3 ubiquitin-protein ligase RHA2A 
 ppo-u.5   7482861   E3 ubiquitin-protein ligase RHA2A 
 ath-u.5   RHA2B   RING-H2 finger protein 2B 
 ath-u.5   RHA2A   RING-H2 finger A2A 
 vvi-u.5   100262985   E3 ubiquitin-protein ligase RHA2A 
 vvi-u.5   104879925   probable E3 ubiquitin-protein ligase XERICO 
 sly-u.5   101266940   E3 ubiquitin-protein ligase RHA2A 
 sly-u.5   101246418   probable E3 ubiquitin-protein ligase XERICO 
 osa-u.5   4335292   receptor homology region, transmembrane domain- and RING domain-containing protein 6 
 zma-u.5   100281639   uncharacterized LOC100281639 

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Top 50 coexpressed genes to 102661897 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102661897 (gma-u.5 coexpression data)

CoexMap"100809233"


gmaLOC100809233 | Entrez gene ID : 100809233      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 1 1 3 2 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (481 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (610 genes)  IEA  
GO CC
GO:0000325 [list] [network] plant-type vacuole  (124 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (292 genes)  IEA  
Protein XP_003517159.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 5,  chlo 4  (predict for XP_003517159.1)
Subcellular
localization
TargetP
other 1  (predict for XP_003517159.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
102661897

.
mtr-u.5
for
25485456

.
ppo-u.5
for
18099148

.
ppo-u.5
for
7475555

.
ppo-u.5
for
7482861

.
ath-u.5
for
RHA2B

.
ath-u.5
for
RHA2A

.
vvi-u.5
for
100262985

.
vvi-u.5
for
104879925

.
sly-u.5
for
101266940

.
sly-u.5
for
101246418

.
osa-u.5
for
4335292

.
zma-u.5
for
100281639

.


Ortholog ID: 1829
Species ath gma sly osa zma bra bra vvi vvi ppo ppo mtr hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol RHA2B LOC102661897 LOC101246418 LOC4335292 LOC100281639 LOC103839504 LOC103841054 LOC104879925 LOC100262985 LOC7475555 LOC18099148 LOC25485456 LOC123429271 LOC107950384 LOC107951671 LOC106432023 LOC125587495 LOC8085843 LOC102581773 LOC102594525 LOC102616539 LOC100825269 LOC107812622 LOC107786351
Function* RING-H2 finger protein 2B probable E3 ubiquitin-protein ligase XERICO probable E3 ubiquitin-protein ligase XERICO receptor homology region, transmembrane domain- and RING domain-containing protein 6 uncharacterized LOC100281639 E3 ubiquitin-protein ligase RHA2B-like putative RING-H2 finger protein ATL69 probable E3 ubiquitin-protein ligase XERICO E3 ubiquitin-protein ligase RHA2A E3 ubiquitin-protein ligase RHA2A RING-H2 finger protein ATL72 E3 ubiquitin-protein ligase RHA2A RING-H2 finger protein ATL64-like probable E3 ubiquitin-protein ligase XERICO E3 ubiquitin-protein ligase RHA2B E3 ubiquitin-protein ligase RHA2B E3 ubiquitin-protein ligase RHA2A-like E3 ubiquitin-protein ligase RHA2A probable E3 ubiquitin-protein ligase RHA2B E3 ubiquitin-protein ligase RHA2A E3 ubiquitin-protein ligase RHA2A E3 ubiquitin-protein ligase MPSR1 E3 ubiquitin-protein ligase RHA2A-like uncharacterized LOC107786351
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00906 Carotenoid biosynthesis 3
bra04016 MAPK signaling pathway - plant 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi04141 Protein processing in endoplasmic reticulum 4
ghi04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00510 N-Glycan biosynthesis 2
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814644 102661897 101246418 4335292 100281639 103839504 103841054 104879925 100262985 7475555 18099148 25485456 123429271 107950384 107951671 106432023 125587495 8085843 102581773 102594525 102616539 100825269 107812622 107786351
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