ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100810332	NPC intracellular cholesterol transporter 1
gma-r.7	100810332	NPC intracellular cholesterol transporter 1
gma-m.5	100810332	NPC intracellular cholesterol transporter 1
gma-u.5	100813262	NPC intracellular cholesterol transporter 1
gma-u.5	100795551	NPC intracellular cholesterol transporter 1
gma-u.5	100784611	NPC intracellular cholesterol transporter 1
mtr-u.5	11425301	NPC intracellular cholesterol transporter 1
mtr-u.5	25490313	NPC intracellular cholesterol transporter 1
ppo-u.5	7481690	uncharacterized LOC7481690
ppo-u.5	7485640	uncharacterized LOC7485640
ppo-u.5	18096072	uncharacterized LOC18096072
ath-u.5	AT4G38350	Patched family protein
ath-u.5	AT1G42470	Patched family protein
bra-r.6	103829698	NPC intracellular cholesterol transporter 1
bra-r.6	103835189	NPC intracellular cholesterol transporter 1
bra-r.6	103864816	NPC intracellular cholesterol transporter 1
vvi-u.5	100242789	uncharacterized LOC100242789
vvi-u.5	100257163	uncharacterized LOC100257163
ghi-r.1	107922255	NPC intracellular cholesterol transporter 1
ghi-r.1	107922168	NPC intracellular cholesterol transporter 1
ghi-r.1	107917961	NPC intracellular cholesterol transporter 1
bna-r.1	106389752	NPC intracellular cholesterol transporter 1-like
bna-r.1	106361551	NPC intracellular cholesterol transporter 1-like
bna-r.1	106446729	NPC intracellular cholesterol transporter 1-like
cit-r.1	102618032	uncharacterized LOC102618032
cit-r.1	102615536	uncharacterized LOC102615536
sly-u.5	101260723	uncharacterized LOC101260723
sot-r.1	102600216	Niemann-Pick C1 protein-like
nta-r.1	107824090	uncharacterized LOC107824090
osa-u.5	9266400	uncharacterized LOC9266400
zma-u.5	103641981	uncharacterized LOC103641981
tae-r.2	123046314	NPC intracellular cholesterol transporter 1
tae-r.2	123190059	NPC intracellular cholesterol transporter 1
tae-r.2	123054170	NPC intracellular cholesterol transporter 1
hvu-r.1	123427500	NPC intracellular cholesterol transporter 1-like
sbi-r.1	8056603	Niemann-Pick C1 protein
bdi-r.1	100832617	NPC intracellular cholesterol transporter 1
cre-r.1	CHLRE_12g550900v5	uncharacterized protein

Top 50 coexpressed genes to 100810332 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100810332 (gma-u.5 coexpression data)

CoexMap"100810332"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx04142 [list] [network] Lysosome (152 genes)

GO BP

GO:0015918 [list] [network] sterol transport

(15 genes)

IEA

GO CC

GO:0016020 [list] [network] membrane

(5894 genes)

IEA

GO MF

GO:0032934 [list] [network] sterol binding	(37 genes)	IEA
GO:0005319 [list] [network] lipid transporter activity	(82 genes)	IEA

Protein

XP_006575763.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, E.R. 2, golg_plas 2, cysk_plas 2, mito_plas 2, cyto_plas 2

(predict for XP_006575763.1)

Subcellular
localization
TargetP

scret 7

(predict for XP_006575763.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100810332	gma-r.7 for 100810332	gma-m.5 for 100810332	gma-u.5 for 100813262	gma-u.5 for 100795551	gma-u.5 for 100784611	mtr-u.5 for 11425301	mtr-u.5 for 25490313	ppo-u.5 for 7481690	ppo-u.5 for 7485640	ppo-u.5 for 18096072	ath-u.5 for AT4G38350	ath-u.5 for AT1G42470	bra-r.6 for 103829698	bra-r.6 for 103835189	bra-r.6 for 103864816	vvi-u.5 for 100242789	vvi-u.5 for 100257163	ghi-r.1 for 107922255	ghi-r.1 for 107922168	ghi-r.1 for 107917961	bna-r.1 for 106389752	bna-r.1 for 106361551	bna-r.1 for 106446729	cit-r.1 for 102618032	cit-r.1 for 102615536	sly-u.5 for 101260723	sot-r.1 for 102600216	nta-r.1 for 107824090	osa-u.5 for 9266400	zma-u.5 for 103641981	tae-r.2 for 123046314	tae-r.2 for 123190059	tae-r.2 for 123054170	hvu-r.1 for 123427500	sbi-r.1 for 8056603	bdi-r.1 for 100832617	cre-r.1 for CHLRE_12g550900v5

Ortholog

Ortholog ID: 5159

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

NPC intracellular cholesterol transporter 1

uncharacterized LOC7481690

uncharacterized LOC7485640

uncharacterized LOC18096072

Patched family protein

NPC intracellular cholesterol transporter 1

uncharacterized LOC100242789

uncharacterized LOC100257163

NPC intracellular cholesterol transporter 1

NPC intracellular cholesterol transporter 1-like

uncharacterized LOC102618032

uncharacterized LOC102615536

uncharacterized LOC101260723

Niemann-Pick C1 protein-like

uncharacterized LOC107824090

uncharacterized LOC9266400

uncharacterized LOC103641981

NPC intracellular cholesterol transporter 1

NPC intracellular cholesterol transporter 1-like

Niemann-Pick C1 protein

NPC intracellular cholesterol transporter 1

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03420	Nucleotide excision repair	2
gma04142	Lysosome	2
gma04136	Autophagy - other	2
gma04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4
gma04142	Lysosome	3
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2
mtr00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	4
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00562	Inositol phosphate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00511	Other glycan degradation	2
vvi00600	Sphingolipid metabolism	2
vvi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	6
vvi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	3
ghi04518	Integrin signaling	3
ghi04142	Lysosome	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	3
ghi04518	Integrin signaling	3
ghi04142	Lysosome	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04148	Efferocytosis	2
ghi04142	Lysosome	2
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00061	Fatty acid biosynthesis	4
bna00620	Pyruvate metabolism	4
bna00640	Propanoate metabolism	4
bna01212	Fatty acid metabolism	4
bna04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00061	Fatty acid biosynthesis	4
bna00620	Pyruvate metabolism	4
bna00640	Propanoate metabolism	4
bna01212	Fatty acid metabolism	4
bna04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00061	Fatty acid biosynthesis	4
bna00620	Pyruvate metabolism	4
bna00640	Propanoate metabolism	4
bna01212	Fatty acid metabolism	4
bna04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	3
cit00190	Oxidative phosphorylation	2
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3
tae00500	Starch and sucrose metabolism	3
tae00010	Glycolysis / Gluconeogenesis	2
tae00030	Pentose phosphate pathway	2
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3
tae00500	Starch and sucrose metabolism	3
tae00010	Glycolysis / Gluconeogenesis	2
tae00030	Pentose phosphate pathway	2
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3
tae00010	Glycolysis / Gluconeogenesis	2
tae00030	Pentose phosphate pathway	2
tae01200	Carbon metabolism	2
tae00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03013	Nucleocytoplasmic transport	2
hvu03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04148	Efferocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

100810332

100813262

100795551

11425301

25490313

7481690

7485640

18096072

829992

840851

103829698

103835189

103864816

100242789

100257163

107922255

107917961

107925446

106446729

106352580

106418356

102618032

102615536

101260723

102600216

107824090

9266400

103641981

123046314

123190059

123054170

123427500

8056603

100832617

5719660

The preparation time of this page was 0.5 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	2	3	2	3	2	3	3	2	1	1	1	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100810332 (gma-u.5 coexpression data)

Top 50 enrichment test to 100810332 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**