ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100810627	deSI-like protein At4g17486
gma-r.7	100810627	deSI-like protein At4g17486
gma-u.5	100802465	deSI-like protein At4g17486
gma-u.5	100804405	UPF0326 protein At4g17486-like
gma-u.5	100809235	UPF0326 protein At4g17486-like
mtr-u.5	25482110	deSI-like protein At4g17486
mtr-u.5	11415476	deSI-like protein At4g17486
mtr-u.5	11430136	deSI-like protein At4g17486
ppo-u.5	7489140	deSI-like protein At4g17486
ppo-u.5	7453903	deSI-like protein At4g17486
ath-u.5	AT2G25190	PPPDE putative thiol peptidase family protein
ath-u.5	AT4G17486	PPPDE putative thiol peptidase family protein
ath-u.5	AT5G25170	PPPDE putative thiol peptidase family protein
bra-r.6	103827657	deSI-like protein At4g17486
bra-r.6	103832464	deSI-like protein At4g17486
vvi-u.5	100245551	deSI-like protein At4g17486
vvi-u.5	100268022	deSI-like protein At4g17486
ghi-r.1	121203070	deSI-like protein At4g17486
ghi-r.1	107929378	deSI-like protein At4g17486
ghi-r.1	107930809	deSI-like protein At4g17486
bna-r.1	125575106	deSI-like protein At4g17486
bna-r.1	111208184	deSI-like protein At4g17486
bna-r.1	111207276	deSI-like protein At4g17486
cit-r.1	EREBP	deSI-like protein At4g17486-like
cit-r.1	102615322	deSI-like protein At4g17486
sly-u.5	101243834	PPPDE putative thiol peptidase family protein
sly-u.5	101244056	deSI-like protein At4g17486
sly-u.5	101244066	PPPDE putative thiol peptidase-like protein
sot-r.1	102604322	deSI-like protein At4g17486
sot-r.1	102601212	deSI-like protein At4g17486
sot-r.1	102600972	deSI-like protein At4g17486
nta-r.1	107763792	deSI-like protein At4g17486
nta-r.1	107804982	deSI-like protein At4g17486
nta-r.1	107807020	deSI-like protein At4g17486
osa-u.5	4341303	deSI-like protein At4g17486
osa-u.5	4336575	deSI-like protein At4g17486
osa-u.5	4331282	deSI-like protein At4g17486
zma-u.5	100216975	uncharacterized LOC100216975
zma-u.5	100272295	DeSI-like protein
zma-u.5	100282449	EREBP-4 like protein
tae-r.2	123106135	deSI-like protein At4g17486
tae-r.2	123093108	deSI-like protein At4g17486
tae-r.2	123084936	deSI-like protein At4g17486
hvu-r.1	123450141	deSI-like protein At4g17486
hvu-r.1	123401249	deSI-like protein At4g17486
hvu-r.1	123411190	deSI-like protein At4g17486
sbi-r.1	8073965	deSI-like protein At4g17486
sbi-r.1	8061979	deSI-like protein At4g17486
sbi-r.1	8066222	deSI-like protein At4g17486
bdi-r.1	100844987	deSI-like protein At4g17486
bdi-r.1	100838757	deSI-like protein At4g17486
bdi-r.1	100843033	deSI-like protein At4g17486
cre-r.1	CHLRE_17g698100v5	uncharacterized protein

Top 50 coexpressed genes to 100810627 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100810627 (gma-u.5 coexpression data)

CoexMap"100810627"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016579 [list] [network] protein deubiquitination

(128 genes)

IEA

GO CC

GO MF

GO:0101005 [list] [network] deubiquitinase activity

(124 genes)

IEA

Protein

XP_003544599.1 [sequence] [blastp]
XP_006596080.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, mito 2, chlo 1, plas 1	(predict for XP_003544599.1)
nucl 4, cyto 4, mito 1	(predict for XP_006596080.1)

Subcellular
localization
TargetP

mito 7, other 5	(predict for XP_003544599.1)
mito 7, other 5	(predict for XP_006596080.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100810627	gma-r.7 for 100810627	gma-u.5 for 100802465	gma-u.5 for 100804405	gma-u.5 for 100809235	mtr-u.5 for 25482110	mtr-u.5 for 11415476	mtr-u.5 for 11430136	ppo-u.5 for 7489140	ppo-u.5 for 7453903	ath-u.5 for AT2G25190	ath-u.5 for AT4G17486	ath-u.5 for AT5G25170	bra-r.6 for 103827657	bra-r.6 for 103832464	vvi-u.5 for 100245551	vvi-u.5 for 100268022	ghi-r.1 for 121203070	ghi-r.1 for 107929378	ghi-r.1 for 107930809	bna-r.1 for 125575106	bna-r.1 for 111208184	bna-r.1 for 111207276	cit-r.1 for EREBP	cit-r.1 for 102615322	sly-u.5 for 101243834	sly-u.5 for 101244056	sly-u.5 for 101244066	sot-r.1 for 102604322	sot-r.1 for 102601212	sot-r.1 for 102600972	nta-r.1 for 107763792	nta-r.1 for 107804982	nta-r.1 for 107807020	osa-u.5 for 4341303	osa-u.5 for 4336575	osa-u.5 for 4331282	zma-u.5 for 100216975	zma-u.5 for 100272295	zma-u.5 for 100282449	tae-r.2 for 123106135	tae-r.2 for 123093108	tae-r.2 for 123084936	hvu-r.1 for 123450141	hvu-r.1 for 123401249	hvu-r.1 for 123411190	sbi-r.1 for 8073965	sbi-r.1 for 8061979	sbi-r.1 for 8066222	bdi-r.1 for 100844987	bdi-r.1 for 100838757	bdi-r.1 for 100843033	cre-r.1 for CHLRE_17g698100v5

Ortholog

Ortholog ID: 227

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

UPF0326 protein At4g17486-like

deSI-like protein At4g17486

PPPDE putative thiol peptidase family protein

deSI-like protein At4g17486

uncharacterized LOC100216975

EREBP-4 like protein

uncharacterized LOC100191813

deSI-like protein At4g17486

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00270	Cysteine and methionine metabolism	3
gma01200	Carbon metabolism	3
gma00020	Citrate cycle (TCA cycle)	2
gma00566	Sulfoquinovose metabolism	2
gma00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04130	SNARE interactions in vesicular transport	3
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	3
ppo04120	Ubiquitin mediated proteolysis	3
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	10
ghi03083	Polycomb repressive complex	6
ghi04141	Protein processing in endoplasmic reticulum	6
ghi00480	Glutathione metabolism	2
ghi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03272	Virion - Hepatitis viruses	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04136	Autophagy - other	4
bna04382	Cornified envelope formation	4
bna04130	SNARE interactions in vesicular transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot04141	Protein processing in endoplasmic reticulum	3
sot03040	Spliceosome	2
sot04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	4
zma00561	Glycerolipid metabolism	2
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	3
tae00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
tae01230	Biosynthesis of amino acids	3
tae00190	Oxidative phosphorylation	2
tae00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	2
tae00513	Various types of N-glycan biosynthesis	2
tae04141	Protein processing in endoplasmic reticulum	2
tae04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04120	Ubiquitin mediated proteolysis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2

Expression

Expression pattern

Entrez Gene ID^*

100809235

100817929

100786432

11433509

11443239

25491272

18107652

7471646

7493418

827462

832588

844408

103874384

103864614

103868706

100245551

100252589

107929378

107888399

107940101

125609246

106401816

102615322

102625145

101244056

101252386

101265568

102604322

102600972

102582965

107807020

107785758

107829525

4341303

4331282

4331955

100216975

100282449

100191813

123144992

123164998

123098381

123450141

123401249

123449420

8061979

8081565

8083353

100838757

100843033

100844954

5717355

The preparation time of this page was 2.5 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	2	3	2	2	3	3	2	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100810627 (gma-u.5 coexpression data)

Top 50 enrichment test to 100810627 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**